PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007327-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 100aa    MW: 11208.5 Da    PI: 3.8428
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007327-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260431.3e-1314061100
              DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                         +vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e
  WALNUT_00007327-RA   1 MVYEANARIRDPVYGCAGAICQLQNQVSELQAQLAKAQAE 40 
                         69**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.759141IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-11138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MVYEANARIR DPVYGCAGAI CQLQNQVSEL QAQLAKAQAE LVNMQCQQAN LVAFICMEMS  60
TQPNHQEEYM SVQQLQPYAD TSCFSSDDNN LGSAWEPLWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858749.12e-69PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-26LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2I4HRG94e-68A0A2I4HRG9_JUGRE; LOB domain-containing protein 1-like
STRINGAES622282e-47(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-19LOB domain-containing protein 1