PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007224-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 117aa    MW: 13091.4 Da    PI: 9.3325
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007224-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC108.15.1e-34191001999
               NF-YC  19 helPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                         h+lPlarikki+k+  ++v+mis+eaP+++skacel+i elt rsw+ a + krrtl+k d+ +av  tdifdflv+ v  d
  WALNUT_00007224-RA  19 HSLPLARIKKIMKKSgDNVNMISCEAPIVFSKACELLIEELTRRSWMVAMQRKRRTLHKEDVVSAVIATDIFDFLVNLVSAD 100
                         89**********865278***********************************************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.53E-251593IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-291684IPR009072Histone-fold
PfamPF008081.5E-192084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MRQAGMYSGI LAGGRTGPHS LPLARIKKIM KKSGDNVNMI SCEAPIVFSK ACELLIEELT  60
RRSWMVAMQR KRRTLHKEDV VSAVIATDIF DFLVNLVSAD STTPIDLTPV EREKLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-2819971693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873QRKRRT
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805841.11e-82PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_018828666.11e-82PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP01e-28NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A2I4FAJ12e-81A0A2I4FAJ1_JUGRE; nuclear transcription factor Y subunit C-1-like
STRINGEOY246821e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-31nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]