PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007224-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YC | ||||||||
Protein Properties | Length: 117aa MW: 13091.4 Da PI: 9.3325 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 108.1 | 5.1e-34 | 19 | 100 | 19 | 99 |
NF-YC 19 helPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k+ ++v+mis+eaP+++skacel+i elt rsw+ a + krrtl+k d+ +av tdifdflv+ v d WALNUT_00007224-RA 19 HSLPLARIKKIMKKSgDNVNMISCEAPIVFSKACELLIEELTRRSWMVAMQRKRRTLHKEDVVSAVIATDIFDFLVNLVSAD 100 89**********865278***********************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.53E-25 | 15 | 93 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-29 | 16 | 84 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-19 | 20 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MRQAGMYSGI LAGGRTGPHS LPLARIKKIM KKSGDNVNMI SCEAPIVFSK ACELLIEELT 60 RRSWMVAMQR KRRTLHKEDV VSAVIATDIF DFLVNLVSAD STTPIDLTPV EREKLEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-28 | 19 | 97 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 73 | QRKRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805841.1 | 1e-82 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_018828666.1 | 1e-82 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 1e-28 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2I4FAJ1 | 2e-81 | A0A2I4FAJ1_JUGRE; nuclear transcription factor Y subunit C-1-like | ||||
STRING | EOY24682 | 1e-59 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 4e-31 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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