PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007194-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 46215.9 Da PI: 7.2728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 163 | 187 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ WALNUT_00007194-RA 163 GEKDCAHYMLTRTCKFGESCKFDHP 187 7889********************8 PP | |||||||
2 | zf-CCCH | 38.7 | 1.6e-12 | 280 | 304 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+++tG Ck+G++CkF+H++ WALNUT_00007194-RA 280 EPLCAFYLKTGNCKFGATCKFHHPK 304 79*********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 361 | 382 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG CkyG++C+++H+ WALNUT_00007194-RA 361 DCPFYLKTGSCKYGATCRYNHP 382 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.263 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 163 | 187 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 277 | 305 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 277 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-6 | 282 | 303 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 356 | 383 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 361 | 384 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 361 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 361 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 362 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MANPLYGYNP SSYGAATAAA ASTTSGLSVY TSRSLTDAYL SDPTTLRYLG SDLSSKYSLS 60 DQRLRTSSSS TATASMYEAL RYSSTPSAAA HLVSQGSWPS ADVAADSLLA GLKRPSEVLY 120 HQTLLGAHSA IGQTEAWYST NSLAKRPRFD NASNLPIYPQ RPGEKDCAHY MLTRTCKFGE 180 SCKFDHPIWV PEGGISDWKE VIRDGNHKDL GSFPMATVGI MCRIKALLNK LGALGNDQYS 240 RLDMVPTHAT SESLPERPGE PDCPGASEND GTALPERPSE PLCAFYLKTG NCKFGATCKF 300 HHPKDIQIPL TGQQNGNGEQ TELTISTEGA IGDAKLYSPL AYTPASICNS KGLPVRLGEL 360 DCPFYLKTGS CKYGATCRYN HPDRNAINPP AAVLGHPIVT SPATHLNIGV VNPAASIYQT 420 IDPRLTQPTG P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 4e-74 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 4e-74 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830434.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X3 | ||||
Swissprot | Q941Q3 | 1e-109 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2I4FFK5 | 0.0 | A0A2I4FFK5_JUGRE; zinc finger CCCH domain-containing protein 37 isoform X3 | ||||
STRING | VIT_19s0085g01180.t01 | 1e-148 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7558 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-108 | floral homeotic protein (HUA1) |