PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007192-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 310aa MW: 35747.1 Da PI: 7.3735

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007192-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.8e-52	11	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+ +yL+kkv+ + ++ +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ WALNUT_00007192-RA 11 VPPGFRFHPTEEELLYYYLRKKVSYEAIDHLDVIREVDLNKLEPWDLKErcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 101 69*******************************************953444443456**************************** PP NAM 89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ + + + +g++ktLvfy+grap+g+ktdW+mheyrl WALNUT_00007192-RA 102 DKAIHLSnnnnnnnNAKRIGMRKTLVFYTGRAPHGRKTDWIMHEYRL 148 *9866655544455*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-55	7	170	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	11	170	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	12	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MMPRNGHELT VPPGFRFHPT EEELLYYYLR KKVSYEAIDH LDVIREVDLN KLEPWDLKER 60 CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKAIHLSNN NNNNNNAKRI 120 GMRKTLVFYT GRAPHGRKTD WIMHEYRLDD DLHTAEVQED GWVVCRIFEK KNNNRGFQPD 180 QGAQDQEQYF TTNHMKASTS SAQVVIEPKQ NHLQELYDYT FDHGRPLAHL PPLISPELAI 240 NAPFLMSPAG SLNTMQEVEC SQNCLRLTAA AGCGLMQQER FINNGEYWSL LDKLLIASNQ 300 SLDQSKSNPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	8	173	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	8	173	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	8	173	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	8	173	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	8	173	17	171	NAC domain-containing protein 19
3swm_B	1e-47	8	173	17	171	NAC domain-containing protein 19
3swm_C	1e-47	8	173	17	171	NAC domain-containing protein 19
3swm_D	1e-47	8	173	17	171	NAC domain-containing protein 19
3swp_A	1e-47	8	173	17	171	NAC domain-containing protein 19
3swp_B	1e-47	8	173	17	171	NAC domain-containing protein 19
3swp_C	1e-47	8	173	17	171	NAC domain-containing protein 19
3swp_D	1e-47	8	173	17	171	NAC domain-containing protein 19
4dul_A	1e-47	8	173	14	168	NAC domain-containing protein 19
4dul_B	1e-47	8	173	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830391.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_018830392.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_018830393.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_018830394.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_018830395.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_018830396.1	0.0	PREDICTED: protein SOMBRERO-like isoform X1
Swissprot	Q9MA17	1e-104	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A2I4FFH0	0.0	A0A2I4FFH0_JUGRE; protein SOMBRERO-like isoform X1
STRING	XP_002521498.1	1e-144	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7204	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-95	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]