PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007093-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 304aa    MW: 34571.9 Da    PI: 8.2425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007093-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-162067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd  l++ ++ +G g+W++ a+  g++Rt+k+c++rw++yl
  WALNUT_00007093-RA 20 KGPWTLEEDSTLIHHIACHGEGRWNLLAKFAGLKRTGKSCRLRWLNYL 67
                        79********************************************97 PP
2Myb_DNA-binding50.83.8e-1673116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  WALNUT_00007093-RA  73 RGNLTPQEQLMILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-221370IPR009057Homeodomain-like
PROSITE profilePS5129416.8651567IPR017930Myb domain
SuperFamilySSF466891.05E-3017114IPR009057Homeodomain-like
SMARTSM007171.9E-131969IPR001005SANT/Myb domain
PfamPF002498.1E-152067IPR001005SANT/Myb domain
CDDcd001678.94E-112267No hitNo description
PROSITE profilePS5129425.21268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2371121IPR009057Homeodomain-like
SMARTSM007175.4E-1572120IPR001005SANT/Myb domain
PfamPF002493.8E-1573116IPR001005SANT/Myb domain
CDDcd001671.45E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPAHTKKVRN SNEEDMELRK GPWTLEEDST LIHHIACHGE GRWNLLAKFA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLMILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SKRFLDAVKC FWMPRLIQKM EQTASPTSNS SLTTSMNSRS SSAPLSPNPT  180
AASLSSSFSP PRKLIHTSSY PNENSCSFTS PIIHTSDSMK ISESTRAHEH PADTLDAFGN  240
TIYSHPNLAN SYSVESRSYD METLMLDPTS AMITSENSLL GCHMEGVDWL SDDMADSLWN  300
MNEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849697.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A2I4H0M90.0A0A2I4H0M9_JUGRE; transcription factor MYB108-like
STRINGXP_008243255.11e-129(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-84myb domain protein 62