PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007081-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 294aa    MW: 33950.5 Da    PI: 7.9099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007081-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1736127198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffk+ +p + +    l+lp kf++e+g +   s+  +l+ ++g sW+v l  +k  +++++   GW++Fv+ + ++ g f+vFk++g+s+f
  WALNUT_00007081-RA  36 FFKIILPYS-MDDMKLRLPTKFVREFGDE--LSTVAVLTVPNGCSWKVGL--EKAENMIWFHdHGWEDFVHHHSIQKGYFLVFKYEGDSNF 121
                         677775555.55556***********865..888999999**********..999999666549***********************9999 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                           +v vf+
  WALNUT_00007081-RA 122 --HVIVFD 127
                         ..888886 PP
2B348.81.3e-15200290896
                         -HHHHTT-E....E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   8 sdvlksgrl....vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         sdv++++r+     lp+ fa+++ +gk    + + led +g++W   ++ + + ++   ++kGW+ F k ++Lk+gD +vF+l+++++  l
  WALNUT_00007081-RA 200 SDVSSRRRIirsrPLPRGFASKYlSGK----RAIELEDCEGKQWPCVCRRTIGTNApSRIGKGWNAFWKTHNLKVGDACVFELIKKNGVVL 286
                         667777555444479********6434....36***************774444446779************************9887777 PP

                         EEEE CS
                  B3  93 vvkv 96 
                         +v++
  WALNUT_00007081-RA 287 KVSI 290
                         7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2330128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-2230128IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-2034127No hitNo description
PROSITE profilePS5086312.54835129IPR003340B3 DNA binding domain
PfamPF023625.1E-1436126IPR003340B3 DNA binding domain
SMARTSM010192.9E-1536129IPR003340B3 DNA binding domain
SMARTSM010193.1E-6199294IPR003340B3 DNA binding domain
PfamPF023622.7E-13200290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-15210291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-14213288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096214294IPR003340B3 DNA binding domain
CDDcd100178.00E-15214292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEVQSRTRRT GVVFDRDHQR PSSSRSRSCD RARPHFFKII LPYSMDDMKL RLPTKFVREF  60
GDELSTVAVL TVPNGCSWKV GLEKAENMIW FHDHGWEDFV HHHSIQKGYF LVFKYEGDSN  120
FHVIVFDLTA TEIMYPSNED HEKMTQNPKL GNQVEIIEAD SSVEESGQRN LDKNEMSTEL  180
HDDHQLFTKQ EEDTEMRSFS DVSSRRRIIR SRPLPRGFAS KYLSGKRAIE LEDCEGKQWP  240
CVCRRTIGTN APSRIGKGWN AFWKTHNLKV GDACVFELIK KNGVVLKVSI LPGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849676.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2I4H0J00.0A0A2I4H0J0_JUGRE; B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein