PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007079-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 332aa    MW: 38171.4 Da    PI: 9.7429
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007079-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-1841134199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+++ps + +++ l++p kf++ +g +   ++ +tl  ++g sW+v l    + +++++ +GW +Fv+ + +++g f+vF+++g+s+f 
  WALNUT_00007079-RA  41 FFKIMLPSAMAQKK-LRIPVKFVRLFGDE--LPTVVTLILPNGCSWQVGLERATGEKEIWFHEGWHDFVEYHSIDSGYFLVFRYEGNSNF- 127
                         99***999999998.********888755..8999***************77677777****************************9999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v vf+k
  WALNUT_00007079-RA 128 -HVLVFDK 134
                         .****998 PP
2B356.64.8e-18233327798
                         .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS..-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesg..rsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         p ++++  r+++p  fa+++ +++  +s++l+  de+   r+W v ++   ++k++    l++GWk F+++n+LkegD +vF+l++r+ + 
  WALNUT_00007079-RA 233 PRSSGS-YRMYVPSGFATSYlSLN--QSVKLQTSDEDDgqREWHVICRChhNRKPRLsLKLGSGWKVFARDNNLKEGDACVFELVQRKPTV 320
                         444444.57***********7666..77777777766689*******7766444333699***************************9999 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         l+v++fr
  WALNUT_00007079-RA 321 LKVSIFR 327
                         *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2437135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2437135IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6240135IPR003340B3 DNA binding domain
CDDcd100179.59E-2140133No hitNo description
PfamPF023624.2E-1441134IPR003340B3 DNA binding domain
SMARTSM010194.2E-1841135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-20221327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-17221327IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998226329IPR003340B3 DNA binding domain
CDDcd100172.34E-20226327No hitNo description
SMARTSM010195.7E-11228329IPR003340B3 DNA binding domain
PfamPF023621.3E-16232327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MCMAAAGNIS KNRRSGMFPN WKNDHHRRPS SSVAGRRPAH FFKIMLPSAM AQKKLRIPVK  60
FVRLFGDELP TVVTLILPNG CSWQVGLERA TGEKEIWFHE GWHDFVEYHS IDSGYFLVFR  120
YEGNSNFHVL VFDKTATEIQ YSSKNLDDDH MIMLSDDDVE KSSHDDKSKE TRAIILSKHE  180
DGETSDHDRE RPVVLSGTST KERSLRMSRG RERAIQAAIT FKPKNPSFMR IMPRSSGSYR  240
MYVPSGFATS YLSLNQSVKL QTSDEDDGQR EWHVICRCHH NRKPRLSLKL GSGWKVFARD  300
NNLKEGDACV FELVQRKPTV LKVSIFRVVD YV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-2321133232146B3 domain-containing transcription factor VRN1
4i1k_B1e-2321133232146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849672.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2I4H0K30.0A0A2I4H0K3_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-30B3 family protein