PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006944-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 129aa MW: 14843.4 Da PI: 10.4819

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006944-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.4	1.8e-36	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+Ck++r+kC ++C+lap fp++++k+f nvhk+FG++nvlkl k+l ++e+++a+++l+y+A++r++dPv G+++vi++lq+++++l+ WALNUT_00006944-RA 10 ACASCKYQRKKCDPHCPLAPFFPQHRRKDFMNVHKVFGVRNVLKLTKNLGHKEKSEAIKTLIYQADVRVKDPVGGCCRVISELQHRIKNLE 100 7****************************************************************************************** PP DUF260 92 aelallke 99 ae ll e WALNUT_00006944-RA 101 AEYRLLLE 108 *9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.131	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-35	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MSSSRNASQA CASCKYQRKK CDPHCPLAPF FPQHRRKDFM NVHKVFGVRN VLKLTKNLGH 60 KEKSEAIKTL IYQADVRVKD PVGGCCRVIS ELQHRIKNLE AEYRLLLEQL AVCRAQKQAK 120 APVHKQQQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	3	102	4	103	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	3	102	4	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018844584.1	8e-92	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A2I4GL15	2e-90	A0A2I4GL15_JUGRE; LOB domain-containing protein 22-like
STRING	cassava4.1_022118m	1e-42	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-35	LOB domain-containing protein 22