PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006915-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 314aa    MW: 34244.1 Da    PI: 8.0095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006915-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W+++Ed  l+ ++  +G+g +W + +++ g++R++k+c++rw++yl
  WALNUT_00006915-RA 14 RGSWSPDEDATLKAYIDTHGTGgNWMALPAKAGLRRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding41.33.6e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+e+d ++  ++ q G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00006915-RA  69 GGFTEEDDYIICTLHSQIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.688962IPR017930Myb domain
SuperFamilySSF466896.5E-2611109IPR009057Homeodomain-like
SMARTSM007177.3E-101364IPR001005SANT/Myb domain
PfamPF002494.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-211569IPR009057Homeodomain-like
CDDcd001676.97E-71662No hitNo description
PROSITE profilePS5129420.36463117IPR017930Myb domain
SMARTSM007175.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2370117IPR009057Homeodomain-like
CDDcd001673.66E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGSWSPD EDATLKAYID THGTGGNWMA LPAKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEDDYIIC TLHSQIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLGNI  120
LSVNTTKSHD KVDHVGSKPK SLPCVSGAEI PSSVNVSSSQ NRNPSTSFGL SANFHSLSSD  180
PINQTYCPEL NMDVSDQFVS TCASTSRNST TSTRNNIVSS ISNSSATFGL DSCVSLAGNS  240
CEVVYGSGVL MDFTGFGSPY NINVPDNYRL SCFQDKTGEV SPSPPCYQNM GDFAFADIRP  300
QGHVLHDPSV RDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844625.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A2I4GL520.0A0A2I4GL52_JUGRE; myb-related protein 308-like
STRINGEOY298401e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-69myb domain protein 84