PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006897-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 37109 Da PI: 4.5112 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.2e-11 | 167 | 209 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + +++ +iL +++Y+k+L WALNUT_00006897-RA 167 MAERRRRKRLNDRLSMLRSIVPKiS------RMDRTSILGDTIDYMKEL 209 79*********************66......9***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.837 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-14 | 164 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-9 | 167 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 167 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.08E-4 | 167 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MELNEQCFLE ELLALRGDTS KIIPAQMNEV FSNGCSTFDY FNPAISFPEY SCCEGFSPQL 60 EQNLDTSYMT FNQVYCPFGN ELSAPQLTDS SLNTLPFPAQ EDYDPFAIME EKELGILGNE 120 IHNLELQASC KAEPIQSPEA QVFTTGECLQ GKNRAKKLQG HPSKNLMAER RRRKRLNDRL 180 SMLRSIVPKI SRMDRTSILG DTIDYMKELL GKINHLQLET EGNPNSTEIS KNVRPNEVLV 240 RNSPKFDVER RNVDTRIDIC CAGKPGLLLL TLSNLEALGL EIEECVISCF NDFTMQASCS 300 DQDMDQRAQQ SSEDIKQALF RNSGFGGGCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 175 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018848702.1 | 0.0 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 3e-76 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2I4GXT8 | 0.0 | A0A2I4GXT8_JUGRE; transcription factor bHLH93-like | ||||
STRING | EOY15558 | 1e-141 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-70 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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