PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006775-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 708aa    MW: 78371.6 Da    PI: 8.0155
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006775-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.5e-23110211199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF  
  WALNUT_00006775-RA 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGVAWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSVVFL- 197
                         89****************************997556555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+++++r+
  WALNUT_00006775-RA 198 -RAENGDLCIGIRRA 211
                         .4488889****996 PP
2Auxin_resp114.31.1e-37277360183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+  a+ +++Fev+Y+Prast+eF vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  WALNUT_00006775-RA 277 AVALAAAGQPFEVTYYPRASTPEFFVKASAVKAAMRMQWCSGMRFKMAFETEDSSRISWfMGTIASVQVSDPLRWPNSPWRLLQ 360
                         5678999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-36103214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29106216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-20109210No hitNo description
PROSITE profilePS5086312.717110212IPR003340B3 DNA binding domain
PfamPF023626.9E-21110211IPR003340B3 DNA binding domain
SMARTSM010191.6E-19110212IPR003340B3 DNA binding domain
PfamPF065073.2E-32277360IPR010525Auxin response factor
PROSITE profilePS5174518.416596676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MEAEKCLDSQ LWHACAGGMV QMPPVNSKVF YFPQGHAEHA QAHVDFTALP RIPAFIPCRV  60
VAVKFLADPD TDEVFAKIRL VSMRNSELGF DDDRVLGSGG SENPEKPASF AKTLTQSDAN  120
NGGGFSVPRY CAETIFPRLD YTADPPVQTV IAKDVHGVAW KFRHIYRGTP RRHLLTTGWS  180
TFVNHKKLVA GDSVVFLRAE NGDLCIGIRR AKRGNGLSPE FPSGWNSGPC HTDSPYGGFS  240
VLLREDNTVM RNGGGNSSPS GNLRRKGKVR PESVTEAVAL AAAGQPFEVT YYPRASTPEF  300
FVKASAVKAA MRMQWCSGMR FKMAFETEDS SRISWFMGTI ASVQVSDPLR WPNSPWRLLQ  360
VTWDEPDLLH NVKCVSPWLV ELVSHIPTTH LSPFLPPRKK LHLLQHPDFP PDGQFPLPSI  420
SGNPLRPSSP LCFPSDNTLA GIQGARHAQF GISLSDLHFN NKLQSGLFPA NVQRLKIPSR  480
TCNGILEGDK NSNENLSCLL TIGNSCQNLE KSDNVKRHQF LLFGQPILTE QQISRSSNDK  540
VSQILYRKNT SDENQEVRFL SDGSGSTLEQ LSPEKSSSAG SSWHQGFQDT ELGLDTGHCK  600
VFMQSEDVGR TLDLSVFYSY EELYRRLANM FGIERSDMLS PVLYQDATGA VKQTGDEPFS  660
DFLKTAKRLT ILKDSGSNNI RRTWITGMRN AENGLDASNK TGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-77738151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808380.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I4DMJ90.0A0A2I4DMJ9_JUGRE; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]