PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006721-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 225aa MW: 25496.5 Da PI: 8.4946 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.1 | 1.4e-30 | 22 | 78 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeC kNhAa+ Gg+a+DGCgEfmp+ geegt +alkC+AC+CHRnFHR+e e+ WALNUT_00006721-RA 22 KVVRYKECHKNHAAENGGNATDGCGEFMPN-GEEGTFEALKCSACNCHRNFHRKEIES 78 679**************************8.999********************9876 PP | |||||||
2 | Homeobox | 17.3 | 8e-06 | 160 | 215 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ftkeq e + ++ e + +++ +++ ++ +++g+++r+ kvW +N + WALNUT_00006721-RA 160 KRFRTKFTKEQKEKMLSFAEkagwRMQKLEESAVQQFCQETGINKRVLKVWMHNNK 215 789***********987666777779****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.7E-28 | 24 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-21 | 24 | 79 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-28 | 25 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.837 | 26 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-30 | 153 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-19 | 156 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-25 | 159 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MNNSTQQAEI QLPRNDCHAH KKVVRYKECH KNHAAENGGN ATDGCGEFMP NGEEGTFEAL 60 KCSACNCHRN FHRKEIESDS CSSHCYHTTP TILNINARRS PNWGHHEDQY NAVLGSSIGC 120 PTTTMMISYK SGSVPSESND EKEDAYGSCP VARPADKVKK RFRTKFTKEQ KEKMLSFAEK 180 AGWRMQKLEE SAVQQFCQET GINKRVLKVW MHNNKHHFAN KNSTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-24 | 160 | 215 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018809238.1 | 1e-171 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 2e-59 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2I4DQ16 | 1e-170 | A0A2I4DQ16_JUGRE; zinc-finger homeodomain protein 4-like | ||||
STRING | EOX92784 | 6e-83 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-53 | homeobox protein 31 |