PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006637-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YA

Protein Properties

Length: 323aa MW: 35423.2 Da PI: 10.221

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006637-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.5	1.7e-31	155	211	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ e+kl ++ rkpy+heSRh hA+rRpRg+gGrF WALNUT_00006637-RA 155 DGPIYVNAKQYHGIIRRRQSRAKAVLENKL-TRVRKPYMHESRHLHAMRRPRGCGGRF 211 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-35	153	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.568	154	214	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-27	157	211	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	157	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.5E-23	188	211	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MATRTMYFKE REGIVHNPMG QLSAPWWSTL SSQSIYGKSC GQLKPLSMEH PSGGDQLIAN 60 KAAGRGTEQA ARGSRTQFTI FPDNCRNSGD GEKPQAAISL QSALPEYQGR FELGFGQHMI 120 YAKYPYVDQC YGVFPSCGPQ ISGRVMLPLN MSTDDGPIYV NAKQYHGIIR RRQSRAKAVL 180 ENKLTRVRKP YMHESRHLHA MRRPRGCGGR FLNTKNSNKG MSGTKVNKAG DGLISQPTGS 240 ASSEVLQSDS GGALNSSRDA NRSVSNISVS EVTSMFSRRD LDHFPINHLI PSVHSLSDMI 300 SGVRGIVMPS KWVAAPNCCN LKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-18	155	218	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851176.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_018851177.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A2I4H4U0	0.0	A0A2I4H4U0_JUGRE; nuclear transcription factor Y subunit A-10-like
STRING	EOY08507	1e-158	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	2e-67	nuclear factor Y, subunit A10