PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006580-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 265aa    MW: 29112.4 Da    PI: 6.1365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006580-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-084272448
                        HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                        W++Ia +++ +Rt++++k++w+++l
  WALNUT_00006580-RA  4 WSAIATHLP-KRTDNEIKNYWNTHL 27
                        *********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.585131IPR017930Myb domain
PfamPF002491.3E-6427IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-12428IPR009057Homeodomain-like
CDDcd001671.04E-6427No hitNo description
SuperFamilySSF466898.97E-7434IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MWIWSAIATH LPKRTDNEIK NYWNTHLKKR LAMMGIDPVT HKPKGTVLES ANGDPKSASN  60
LSHMAQWENT RLEAEERLVR ESQLCYQLYD LPPGFSSGRS SAAASGMLLN ETTTSKLAPP  120
RCLDVLKVWE SVMLESMLAA GIDHHGGVDS GSVFGLGMGG NSDIASEVSA LGFLEINARD  180
HQTYLNEFNE ISTMQLHKMN LATGDVGDRQ HHHDHDGVFN NLGNHILSAN SLITGSAGSG  240
SSNAVEERAR DEKNYWHDII NTGSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829390.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLA0A2I4FCL60.0A0A2I4FCL6_JUGRE; myb-related protein Zm1-like
STRINGXP_010093592.11e-50(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-36myb domain protein 106