PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006579-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 394aa    MW: 44107.8 Da    PI: 7.9983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006579-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-1858105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+WT+eEd++l+ +++q+G g+W+  +r+ g+ R++k+c++rw++yl
  WALNUT_00006579-RA  58 RGPWTPEEDQKLLAYIQQYGCGSWRCLPRKAGLQRCGKSCRLRWNNYL 105
                         89*********************************************7 PP
2Myb_DNA-binding45.71.5e-14111156148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++  Ed  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  WALNUT_00006579-RA 111 RGQFSVLEDRTIIQLHALLGSR-WSAIATHLP-KRTDNEIKNYWNTHL 156
                         7899999***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2349108IPR009057Homeodomain-like
PROSITE profilePS5129415.15853105IPR017930Myb domain
SuperFamilySSF466891.97E-2956152IPR009057Homeodomain-like
SMARTSM007171.5E-1157107IPR001005SANT/Myb domain
PfamPF002491.2E-1558105IPR001005SANT/Myb domain
CDDcd001675.79E-1160105No hitNo description
PROSITE profilePS5129423.583106160IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-24109160IPR009057Homeodomain-like
SMARTSM007171.4E-14110158IPR001005SANT/Myb domain
PfamPF002496.0E-14111156IPR001005SANT/Myb domain
CDDcd001679.94E-11114156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTDSLTDLVR FISLPIYSLF LQIISAERAS IFQALFSSAC FNTRMGRTPC CNADGMNRGP  60
WTPEEDQKLL AYIQQYGCGS WRCLPRKAGL QRCGKSCRLR WNNYLRPDIK RGQFSVLEDR  120
TIIQLHALLG SRWSAIATHL PKRTDNEIKN YWNTHLKKRL AMMGIDPVTH KPKRTVLESA  180
NGDPKSASNL SHMAQWENTR LEAEERLVRE SQLCYQLYDP PPGFSSGRSS VAASGMLLNE  240
TTTSKLARPR CLDVLKVWEN VMVESMLAAG NDHHGGVDSG SVFGLGMGGN SDIASEVSAL  300
GFLEINARDH QTYLNEFNEI STMQLHKMNL ATGDVGYRHH HHDRDGVFNN MPNHILSANS  360
LITGSAGSGS SNAVEERARN EMNYWHDIIN TGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28581607108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829462.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A2I4FCT40.0A0A2I4FCT4_JUGRE; protein ODORANT1-like
STRINGXP_010093592.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.15e-93myb domain protein 106