PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006409-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 272aa    MW: 30790.8 Da    PI: 7.5449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006409-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08165212455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  WALNUT_00006409-RA 165 SHSLAERVRRGKINERLRCLQDIVPRC----YKSMGMAVMLDEIINYVQSLQ 212
                         8*************************8....3669999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-16159229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-9159216No hitNo description
PROSITE profilePS5088814.907161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAEFTVDLQI FRVSFPVSDI DPNMEIANQY AGLNPSVLTT SDMDFQCLMP FSSDNFFNNH  60
QALEFTGTLV ENFPWTLHQL NQNVVPIAQP MNVSAGNELH DSKKRKAMDK PESSSGTSSP  120
QVSESGIKRK NSSGRGKRVK SNEKEEEKPK EVVHVRARRG QATDSHSLAE RVRRGKINER  180
LRCLQDIVPR CYKSMGMAVM LDEIINYVQS LQNQVEFLSM KLTAASSFYN FNSDTNTLET  240
MQRAKAYEAK ELERLMKEGY GGVTCFHSTW SL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830355.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK79e-67BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2I4FFD10.0A0A2I4FFD1_JUGRE; transcription factor BEE 3-like
STRINGXP_007154151.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.16e-66BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]