PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006399-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 267aa MW: 28813.5 Da PI: 7.3195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.3 | 1.1e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C +dC+++p++ p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ P+yG++g++++++++ WALNUT_00006399-RA 4 SCNGCRVLRKGCGEDCTIRPCLqwirtPESQANATVFLAKFYGRAGLINLINAGPEHHRPEIFKSLLYEACGRVVSPIYGSTGLFSSGSWN 94 6****************************************************************************************** PP DUF260 87 leqlkaelallke 99 l++ ++e++l+++ WALNUT_00006399-RA 95 LCHDAVEAVLRGA 107 *****99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.322 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCGEDCT IRPCLQWIRT PESQANATVF LAKFYGRAGL INLINAGPEH 60 HRPEIFKSLL YEACGRVVSP IYGSTGLFSS GSWNLCHDAV EAVLRGAPIM KVLSESVVNP 120 PVQACDIRHV VKPAPSDQLH KVKKSRSKVK SSVVKPQPKA KPEVDSASIQ SPGNSGSDRQ 180 LWCDNDLGVS VSRNPSPGGN STETDCISAE TVEASLFAKP DEQADGCSDV DLELTLAFGN 240 SEHVKREEQN NGYDNDTCKK LVGSQAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830073.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 3e-68 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2I4FEJ7 | 0.0 | A0A2I4FEJ7_JUGRE; LOB domain-containing protein 41-like | ||||
STRING | EOY21024 | 8e-86 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 8e-69 | LOB domain-containing protein 41 |