PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006396-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 408aa    MW: 46421.4 Da    PI: 5.3155
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006396-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.71.1e-081659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + + ++++fC  ++ +lC+ C  + H+       H++v
  WALNUT_00006396-RA 16 ARACDSCLRRRARWFCAADDAFLCQACDASVHSAnllasrHERV 59
                        578*****************************668888888876 PP
2CCT68.32.1e-23339382144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  WALNUT_00006396-RA 339 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 382
                         9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7511461IPR000315B-box-type zinc finger
PfamPF006432.9E-71659IPR000315B-box-type zinc finger
CDDcd000217.28E-101761No hitNo description
PROSITE profilePS5101716.083339381IPR010402CCT domain
PfamPF062035.4E-18339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MITEKKAANA MGGKTARACD SCLRRRARWF CAADDAFLCQ ACDASVHSAN LLASRHERVR  60
LQSSSVKPNN DISAVVDDNS PPAWHRGFTR KARTPRHNKP LLVQQAKEEE KSLDLLPCVP  120
EIGSEEVSQE ASSNEEKLLL RVPIFNPFAT SELCNEMENT IDDERTTMES DEVERMVAED  180
YGHDRVCELD ELHGFLSSDM ELADFAADVE CLLGKGLDED SCDVKGLRLL DCKEEDDIEF  240
YVDFGEEMEK KVIPMAENKM MNGDQGCDEE MKREIFLRLN YEEVITAWPG QRSPWTTGTR  300
PELNPDNCWQ NIMGSCPKDV HHYPYGETAS VGVRTDGCRE ARVSRYREKR RTRLFSKKIR  360
YEVRKLNAEK RPRMKGRFVK RTSMLMAGTT TTTTTTTTSA FPAYLINK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349365RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830038.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2I4FEG30.0A0A2I4FEG3_JUGRE; zinc finger protein CONSTANS-LIKE 16-like
STRINGPOPTR_0015s06480.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-89B-box type zinc finger protein with CCT domain