PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006318-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 379aa MW: 42739.4 Da PI: 7.9528

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006318-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.6e-31	66	119	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave LGGsekAtPk +l+lmk kgL+++hvkSHLQ+YR+ WALNUT_00006318-RA 66 PRLRWTPDLHLCFVHAVETLGGSEKATPKLVLQLMKTKGLSIAHVKSHLQMYRS 119 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.987	62	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	62	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-13	64	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	66	121	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	67	118	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNGSEDTEFC KTCSSSKNSD DEEEAEDTVN EIGKLQNGGN SNNSTVESEK KEASGSVRQY 60 VRSKMPRLRW TPDLHLCFVH AVETLGGSEK ATPKLVLQLM KTKGLSIAHV KSHLQMYRSK 120 KMDSSNRVAT EQGLFMMESG DHHIYNVSRL PMLQSFNSQS PVISSGNLRY DASLRRHDNQ 180 AQYWKWTLGR ASNVGLFGSV DTRRSIIGSN DKYNSEECNL QVRDSSFNGK ATWWTRHQSL 240 DEFQPLQGTR QIRLKQTSVE SNLIIQFQER CTYQANYLHN AELPGHKDRR NFEEAQNSWK 300 RKALDSNFGL DLNLALKASP SNDEFENMST LDGDEDVASS LSLSLSSSPP SKQFGRLKDG 360 DIGRRKLHSR GTSTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNGSEDTEFC KTCSSSKNSD DEEEAEDTVN EIGKLQNGGN SNNSTVESEK KEASGSVRQY  60
VRSKMPRLRW TPDLHLCFVH AVETLGGSEK ATPKLVLQLM KTKGLSIAHV KSHLQMYRSK  120
KMDSSNRVAT EQGLFMMESG DHHIYNVSRL PMLQSFNSQS PVISSGNLRY DASLRRHDNQ  180
AQYWKWTLGR ASNVGLFGSV DTRRSIIGSN DKYNSEECNL QVRDSSFNGK ATWWTRHQSL  240
DEFQPLQGTR QIRLKQTSVE SNLIIQFQER CTYQANYLHN AELPGHKDRR NFEEAQNSWK  300
RKALDSNFGL DLNLALKASP SNDEFENMST LDGDEDVASS LSLSLSSSPP SKQFGRLKDG  360
DIGRRKLHSR GTSTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821715.1	0.0	PREDICTED: uncharacterized protein LOC108991786
TrEMBL	A0A2I4EQN1	0.0	A0A2I4EQN1_JUGRE; uncharacterized protein LOC108991786
STRING	VIT_13s0067g01500.t01	3e-85	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-41	G2-like family protein