PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006308-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 686aa    MW: 75477.1 Da    PI: 6.5686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006308-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08273293526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd+C +aHg
  WALNUT_00006308-RA 273 PCPEFRK-GTCQKGDTCEYAHG 293
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-1511156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1432180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01275105IPR002110Ankyrin repeat
PROSITE profilePS5029714.02675153IPR020683Ankyrin repeat-containing domain
PfamPF136374.8E-877134No hitNo description
CDDcd002042.83E-1177150No hitNo description
SMARTSM002480.068110142IPR002110Ankyrin repeat
PROSITE profilePS500889.751110145IPR002110Ankyrin repeat
PROSITE profilePS5010313.31268295IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5268294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4273295IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5273293IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.747303327IPR000571Zinc finger, CCCH-type
SMARTSM0035633303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MCSGSNNKLS SLSFEMEGGF QKHNRFFYDC SVLLELSAMD DLEAFRSEVE EKGFDVNEAS  60
FWYCRRIGSK KMAFEERTSL MIAALSGSVK VLNYLIETGK VDVNRVCGSD KVTALHCAVA  120
GGTNSSLGIV KLLLDASADA DCINANGNRP VDLIGHVLKS PSNSNWKAME LLLKGDISVG  180
EGEQTAIQEE EQQKIAMPQL LKEATEKKEY PTDVSLPDIN NGIYGTDEFR MYTFKVKPCS  240
RAYSHDWTDC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG TCQKGDTCEY AHGVFESWLH  300
PAQYRTRICK DETGCMRKVC FFAHKPEELR PVYASTGSAM PSPKSHMTGA PDMTMMSPLA  360
LSSSSMSTTT TATPIMSPKS GSLWQNKLNL TPPALQLPGS RLKTALSARD LDLEMELLGL  420
ESHASQQQHQ QQLIDEITRL STSSPSPSPS PPCWNKEFSQ IGDLKTTNLD DIFGSLDSSM  480
LSQLQGLPLK STTPTQLQSA NGLQMRQNMN QLRASYPTNL SSSPVRKSSS FGFDSSAAVA  540
AAVMNSRSAA FAKRSQSFID RGAGIQRPGL TAAGNSASMM PSTHSDWRSP DGKLDWGING  600
DELNKLKKSA SFRFRDNNVA TATTLMPSVV NEPDVSWVNS LVKDVSHESS GLFATKNQQY  660
NYGNAGNEIL PPWVEQLYME QEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4064645e-99JX406464.1 UNVERIFIED: Fagus sylvatica clone 99 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821786.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2I4EQV90.0A0A2I4EQV9_JUGRE; zinc finger CCCH domain-containing protein 29-like
STRINGEMJ214130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein