PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006300-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-X1
Protein Properties Length: 902aa    MW: 100808 Da    PI: 8.3919
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006300-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.16e-06213231120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG H+C  lCH+GpCp+Cp+
  WALNUT_00006300-RA 213 CG-HRCLLLCHPGPCPSCPK 231
                         **.***************96 PP
2zf-NF-X124.36.9e-08265283119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG H+C ++CH GpCppC+
  WALNUT_00006300-RA 265 CGVHRCTETCHDGPCPPCR 283
                         ******************8 PP
3zf-NF-X116.91.4e-05319339120
            zf-NF-X1   1 CGkHkCqklCHe.GpCppCpq 20 
                         CGkH C+k CH+ G+C++Cp+
  WALNUT_00006300-RA 319 CGKHACGKGCHLaGECGECPL 339
                         *******************95 PP
4zf-NF-X1186.3e-06428447120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+H C++ C+ G+CppC++
  WALNUT_00006300-RA 428 CGRHACKRRCCDGDCPPCSE 447
                         ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.48E-6103173No hitNo description
PROSITE patternPS013590104167IPR019786Zinc finger, PHD-type, conserved site
CDDcd060089.56E-6201249No hitNo description
SMARTSM004380.012213231IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017213230IPR000967Zinc finger, NF-X1-type
CDDcd060082.03E-8255295No hitNo description
SMARTSM004383.7E-5265284IPR000967Zinc finger, NF-X1-type
PfamPF014229.8E-6265283IPR000967Zinc finger, NF-X1-type
CDDcd060085.36E-7309350No hitNo description
SMARTSM004380.025319339IPR000967Zinc finger, NF-X1-type
PfamPF014221.1319338IPR000967Zinc finger, NF-X1-type
CDDcd060082.23E-8365414No hitNo description
SMARTSM004380.32375395IPR000967Zinc finger, NF-X1-type
PfamPF014220.049375394IPR000967Zinc finger, NF-X1-type
CDDcd060082.65E-8418466No hitNo description
SMARTSM004380.0092428447IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-4428446IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-10445493No hitNo description
PfamPF014220.027449473IPR000967Zinc finger, NF-X1-type
SMARTSM004380.02455474IPR000967Zinc finger, NF-X1-type
SMARTSM0043841518533IPR000967Zinc finger, NF-X1-type
PfamPF0142226522532IPR000967Zinc finger, NF-X1-type
SMARTSM00438240541586IPR000967Zinc finger, NF-X1-type
PfamPF0142278541550IPR000967Zinc finger, NF-X1-type
SMARTSM0043810623656IPR000967Zinc finger, NF-X1-type
PfamPF014220.3623633IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038666684IPR000967Zinc finger, NF-X1-type
PfamPF014220.9666683IPR000967Zinc finger, NF-X1-type
SMARTSM004385.2729750IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MDGSKTTTPS TPTSVKSATL NNFRIPKMTS TNDHRQQPPS DSDSDFDSDT DHGHTGSRPF  60
RHTDLSNSIF KAYFESTNQS SPSTSDLNKI QSFLTSSSSG ALSCLICLER IRPSDPTWSC  120
SSLCFAVFHL ICIQSWARQA SDLAAARAAI RLSVSPELAS VWNCPKCRVQ YTKSQIPKIY  180
LCFCGKLQDP PSDPWVLPHS CGEICDRPLK HNCGHRCLLL CHPGPCPSCP KLVKSVCFCG  240
AVNDVRRCGF KKFFCNNVCS KLLDCGVHRC TETCHDGPCP PCRARGVYRC QCGKVEEAER  300
ECCERNFRCE NPCGKALACG KHACGKGCHL AGECGECPLQ GKRTCPCGKR VYQGMSCDVE  360
TPPLCGATCD KTLSCGLHRC HERCHRGLCI ETCRIVVAKS CRCGSLKKEV PCYQDLLCER  420
KCQRMRDCGR HACKRRCCDG DCPPCSEVCG RKLRCKNHKC PSPCHRGVCA PCPVMVTISC  480
ACGETHFEVP CGTEADQKPP RCPKPCDIVP LCRHGSNCKP HKCHYGACPP CRLPCEEEYP  540
CGHKCKLRCH GPRPPPNSEF TLKPKKKKSI HQSECIPGSV CPPCPELVWR SCLGQHIGAE  600
RMMVCSNRTQ FSCENLCGNL LSCGNHYCTK TCHTLKSLPA TPIQNERSES CEECYLPCQK  660
ERKPTCSHHC PLPCHPGECP PCKVLVKRSC HCGAMVHVFE CIYYNGLSEK EQMIVRSCGG  720
PCHRKLPNCT HLCPETCHPG ECPSPQKCSK KIFVRCKCQT LKREWLCRDV QAAYRNAGCD  780
PRDVLKNQYG LGLLSCNCDC KNKVQVATSE LQLRKSKVVE EKEPDTEKNV RKRRKRRERI  840
QDAEQISRLQ KIAATVKWLL LFLALAVVII AVANYGYKGL IWLSDWMNQV EEQRHRRRYT  900
RI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1830836RKRRKRR
2830837RKRRKRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821849.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2I4ER320.0A0A2I4ER32_JUGRE; NF-X1-type zinc finger protein NFXL2 isoform X1
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors