PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006270-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 288aa    MW: 33456.4 Da    PI: 9.0762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006270-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28.1e-082467344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT eE +++ +a + +  +   +W+++a++++ g+t  +++  +
  WALNUT_00006270-RA 24 EWTREENKKFERALAIYDENthdRWTKVAEMIP-GKTVWDVIKQY 67
                        7********************************.***87777666 PP
2Myb_DNA-binding378e-12124168347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ +++ + + +G g+W+ I+r    ++t+ q+ s+ qky
  WALNUT_00006270-RA 124 PWTEDEHRRFLMGLQTYGRGDWRNISRNYVITKTPTQVASHAQKY 168
                         8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5912073IPR017884SANT domain
SMARTSM007173.3E-112173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-42369IPR009057Homeodomain-like
SuperFamilySSF466892.32E-122377IPR009057Homeodomain-like
CDDcd001671.34E-92470No hitNo description
PfamPF002493.0E-62468IPR001005SANT/Myb domain
PROSITE profilePS5129417.855117173IPR017930Myb domain
SuperFamilySSF466895.83E-16118172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-18120172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-10121168IPR009057Homeodomain-like
SMARTSM007172.2E-10121171IPR001005SANT/Myb domain
CDDcd001671.98E-8124169No hitNo description
PfamPF002492.4E-10124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
METLYPASFM SNSNWFVQAS QSTEWTREEN KKFERALAIY DENTHDRWTK VAEMIPGKTV  60
WDVIKQYKEL EDDVSDIEAG RFPIPDYLIS SFTMELFDDR NFDAHRRKSS TARGPDQERK  120
KGVPWTEDEH RRFLMGLQTY GRGDWRNISR NYVITKTPTQ VASHAQKYFI RQLSGGKDKR  180
RPSIHDITTV SLTDTTPENN KPLPYDQSFV LPLQQKPTSA PRMSLDWNQP PNEAVTVFDL  240
ARGNLLMSSP YDFKAQGRNL YGSAHYGTHT KPHNLMFQFQ SSRHQIPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-15251021187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821689.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4EQM30.0A0A2I4EQM3_JUGRE; transcription factor DIVARICATA-like
STRINGXP_008233716.11e-142(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]