PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006259-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 443aa    MW: 48044.1 Da    PI: 5.4998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006259-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.8e-164994147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W+++Ed  l ++v q+G ++W++Iar ++ gR++k+c++rw + 
  WALNUT_00006259-RA 49 KGPWSPDEDTVLGRLVGQFGARNWSLIARGIP-GRSGKSCRLRWCNQ 94
                        79******************************.***********985 PP
2Myb_DNA-binding58.31.7e-18101145147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T eEd ++v+a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  WALNUT_00006259-RA 101 RKPFTDEEDRIIVKAHAIHGNK-WAAIAKLLP-GRTDNAIKNHWNST 145
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.4244495IPR017930Myb domain
SuperFamilySSF466898.27E-3046142IPR009057Homeodomain-like
SMARTSM007172.5E-124897IPR001005SANT/Myb domain
PfamPF002491.5E-144994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2450102IPR009057Homeodomain-like
CDDcd001673.26E-125193No hitNo description
PROSITE profilePS5129426.88296150IPR017930Myb domain
SMARTSM007174.7E-18100148IPR001005SANT/Myb domain
PfamPF002493.3E-16101145IPR001005SANT/Myb domain
CDDcd001671.33E-13103146No hitNo description
Gene3DG3DSA:1.10.10.603.1E-24103149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MIEEQQGTGS PAANCISDSG VCVADDIESV GRADGEVSGD IVGSKGKVKG PWSPDEDTVL  60
GRLVGQFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDR IIVKAHAIHG  120
NKWAAIAKLL PGRTDNAIKN HWNSTLKRRC TELGRLKPTG AEKMEDGSFD RTRVSSEETL  180
SVGAVDSFNA PEGRDIPMVD RPRPCGQMKE DHFVAEAREH HGIDVPKVDG PHLCGYKLVE  240
EGHFVDEGRE NPTLSRPVAR VSAFSIYNPP SGPNGSVLPK IVPAQGPLIQ ASKPDFGVCK  300
FLEDAYGEPM VPSQCGHGCC ADSSGGQSRS SLLGPEFVEF AEQPFSSHEL ISIATDLNNI  360
AWIKSDHEKN CAQIPDNVGS QRVSETAGAA SLMGTFEVEQ SLRNERICVE EGQNRLIDMM  420
TEMVSTQMPR QTFGLPAEVK GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39481496107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821900.10.0PREDICTED: myb-related protein P-like
TrEMBLA0A2I4ER670.0A0A2I4ER67_JUGRE; myb-related protein P-like
STRINGXP_008233695.11e-165(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-94myb domain protein 109