PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006190-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 335aa MW: 36461 Da PI: 6.5112 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.4e-35 | 28 | 123 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l+++ WALNUT_00006190-RA 28 TGRKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDNLAELppwhppgtsnatpeqpdpdggtaemti 118 79**************************************************************888887665443332222222111111 PP TCP 66 ssssaseceaesssssasnsss 87 ++s+ WALNUT_00006190-RA 119 A-----------------EQSE 123 0.................1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-32 | 28 | 101 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.29 | 30 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MQSTETMGMK STGGEIVQVQ GGHIVRSTGR KDRHSKVYTA KGLRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSAIDNLAE LPPWHPPGTS NATPEQPDPD GGTAEMTIAE 120 QSESSGYNFQ LHRQLAENPD DNSTFIPPSL DSEAITDTLK SLFPTSSATS SINFQSYPPD 180 ITSRASNPTQ DLGLSLHSFQ DHSAPNGQTL FAGSASVGFD ANYQRMVAWN SDASAENRGG 240 FVFSSPALPQ QALLGSPFSQ RGPFQSSFDP SARAWDECPT AASHPQKTQP IHQSSIFGSR 300 FVSEPSFCIP GIIQGEEEQS AHSHRPSSSR TNSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-22 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-22 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824268.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_018824269.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_018824270.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q9MAH8 | 1e-76 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A2I4EXZ1 | 0.0 | A0A2I4EXZ1_JUGRE; transcription factor TCP4-like | ||||
STRING | cassava4.1_011082m | 1e-145 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 4e-79 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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