PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006190-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 335aa    MW: 36461 Da    PI: 6.5112
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006190-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.4e-3528123287
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l+++                           
  WALNUT_00006190-RA  28 TGRKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDNLAELppwhppgtsnatpeqpdpdggtaemti 118
                         79**************************************************************888887665443332222222111111 PP

                 TCP  66 ssssaseceaesssssasnsss 87 
                                           ++s+
  WALNUT_00006190-RA 119 A-----------------EQSE 123
                         0.................1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3228101IPR005333Transcription factor, TCP
PROSITE profilePS5136932.293088IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQSTETMGMK STGGEIVQVQ GGHIVRSTGR KDRHSKVYTA KGLRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDNLAE LPPWHPPGTS NATPEQPDPD GGTAEMTIAE  120
QSESSGYNFQ LHRQLAENPD DNSTFIPPSL DSEAITDTLK SLFPTSSATS SINFQSYPPD  180
ITSRASNPTQ DLGLSLHSFQ DHSAPNGQTL FAGSASVGFD ANYQRMVAWN SDASAENRGG  240
FVFSSPALPQ QALLGSPFSQ RGPFQSSFDP SARAWDECPT AASHPQKTQP IHQSSIFGSR  300
FVSEPSFCIP GIIQGEEEQS AHSHRPSSSR TNSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223588154Putative transcription factor PCF6
5zkt_B4e-223588154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824268.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_018824269.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_018824270.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH81e-76TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2I4EXZ10.0A0A2I4EXZ1_JUGRE; transcription factor TCP4-like
STRINGcassava4.1_011082m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-79TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]