PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006162-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 502aa    MW: 55399.9 Da    PI: 8.8399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006162-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05104124323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F r  nL+ H r H
  WALNUT_00006162-RA 104 CEICGKGFQRDQNLQLHRRGH 124
                         *******************88 PP
2zf-C2H213.40.00023178200123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  WALNUT_00006162-RA 178 WKCEKCSKRYAVQSDWKAHSKTC 200
                         58*****************9998 PP
3zf-C2H212.10.00058208226523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++++H   +
  WALNUT_00006162-RA 208 DCGTVFSRRDSFVTHRAFC 226
                         8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-6101124No hitNo description
Gene3DG3DSA:3.30.160.604.4E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489102124IPR007087Zinc finger, C2H2
SMARTSM003550.076102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4166199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-6173198No hitNo description
SMARTSM00355130178198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLEKMAEEAH PNLIDENTIR PGSNPPVAKK KRNLPGTPGK LPYSHISVAF TIPFSLLFVL  60
VTGIFKVVNV QMVIPNECFS STDPEAEVIA LSPKTLMATN RFLCEICGKG FQRDQNLQLH  120
RRGHNLPWKL KQRTSKEPRK RVYVCPEKAC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC  180
EKCSKRYAVQ SDWKAHSKTC GTREYKCDCG TVFSRRDSFV THRAFCDALA EETARVKAVS  240
NMNTAVAGNI NYHFMGTPLG HSIPQNFPSI FKPISSNEDT MINPTTRGLS LWIGHGSQGQ  300
ETMVNNNLQG IHQLGPLCSG ETFADPLVSC SNMSPSDYHQ NWVFGTKLSS SNAQELTSTS  360
LPLIDVKEAG TQLLSIPSLY ETQHQSNQTP SANMSATALL QKAAQIGSTS TDPSFLGSFR  420
FKCNNDSRVQ DGNKLCGPYG SNSILSNLGK DAEKTAGDLF QIHQAKRRHA ENEDGAGGET  480
RDFLGVGTVQ PICHPSSFNG WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37174243372Zinc finger protein JACKDAW
5b3h_F9e-37174243372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843473.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-141IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2I4GHU40.0A0A2I4GHU4_JUGRE; zinc finger protein MAGPIE-like
STRINGEOX995370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-143C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]