PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006161-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 312aa    MW: 35274 Da    PI: 8.9996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006161-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.4e-32802201128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+P+d+e++ e+L+ kv ++       l   + +i+++d    i++++P++Lp  v+++ +  ++F++ +k+y+tg+rk+r+++ 
  WALNUT_00006161-RA  80 LPAGVKFDPSDQEIL-EHLEGKVLSDArklhplL---DeFIPTIDgengICYTHPERLP-GVSKDGQVRHYFHRPSKAYTTGTRKRRKVHt 165
                         799***********9.99****999885664332...233555444445**********.566677888******************7444 PP

                 NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk++++++  g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  WALNUT_00006161-RA 166 dmegsETRWHKTGKTRPIFV-IGKVKGFKKILVLYtnYGKQRKPEKTNWVMHQYHL 220
                         56555788************.9999**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3669239IPR003441NAC domain
PROSITE profilePS5100532.8380239IPR003441NAC domain
PfamPF023653.4E-1481220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTQCNEGGDN NIIVSANGRD YPIRTCATCG YQIKCQDKLQ VISIFFFFFM GSNFSGLAVI  60
NSDASITIYN RLDFTICRGL PAGVKFDPSD QEILEHLEGK VLSDARKLHP LLDEFIPTID  120
GENGICYTHP ERLPGVSKDG QVRHYFHRPS KAYTTGTRKR RKVHTDMEGS ETRWHKTGKT  180
RPIFVIGKVK GFKKILVLYT NYGKQRKPEK TNWVMHQYHL GNNEEETDGE LVVSKIFYQT  240
QPRQCGSFIK ESLSSKLKGQ NGHGSTGLRK NGLFEYYNSS LICFEQGSQN GSSTPRDLLP  300
HFAVHDVSSF IS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843472.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 73-like
SwissprotO494591e-105NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2I4GHU70.0A0A2I4GHU7_JUGRE; LOW QUALITY PROTEIN: NAC domain-containing protein 73-like
STRINGXP_002517849.11e-139(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-107NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]