PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006160-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 421aa MW: 46665.8 Da PI: 6.9936 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.4 | 1.8e-24 | 145 | 198 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++WtpeLH rFv+aveq G +kA+P++ilelm+++ L +++++SHLQkYR+ WALNUT_00006160-RA 145 KVKVDWTPELHMRFVQAVEQV-GVDKAVPSRILELMGIERLNRHNIASHLQKYRS 198 5689*****************.********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.235 | 142 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-15 | 143 | 202 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 143 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-23 | 145 | 198 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-7 | 148 | 197 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MFIHVSPFRS TMDHENQGDQ MKRFAVGAND ITDFSDGNLP DSIDFDDLSV LINDGDALPD 60 LEMDSENLAE LCACGGGEKV EDNAKNEKEY EVSGSGSGLN SSSSRGDQDI VSKRDGSVVM 120 NQPIKEADKG RKSPTKSKIS QGKRKVKVDW TPELHMRFVQ AVEQVGVDKA VPSRILELMG 180 IERLNRHNIA SHLQKYRSSH RKHLVAREAE ATNWSKTREM NGQATGGVGR RDTSPWQAPT 240 CMGFPPITPM HHFRPLLVWG HPTMDQSLMP MMWPKHRADH PPSPPSPAWA PVSWPPLRDP 300 LHDWHPHQQS APNVLNRGTP CFPQPILPTP RHYVSPPVSG IQPHTIYKVD PNIGAPTRQL 360 DPNNPILDIH PTKESIDAAI GDVISKPWLP LPLGLKPPSD HDGVLVELQR HGVLKIPSSH 420 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-15 | 142 | 202 | 2 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843455.1 | 0.0 | PREDICTED: transcription activator GLK2-like isoform X1 | ||||
Refseq | XP_018843456.1 | 0.0 | PREDICTED: transcription activator GLK2-like isoform X1 | ||||
Swissprot | Q9SIV3 | 2e-73 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A2I4GHU2 | 0.0 | A0A2I4GHU2_JUGRE; transcription activator GLK2-like isoform X1 | ||||
STRING | VIT_12s0028g03100.t01 | 1e-138 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-70 | GBF's pro-rich region-interacting factor 1 |