PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006018-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 546aa    MW: 60968.7 Da    PI: 5.8319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006018-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.92.9e-1261745451373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L+ cAeavs++d + a al++ l++ +s +gdp+qRl ay++e+L+arl rs+s +yk+l+++e +   sse ++++++++e++P+ 
  WALNUT_00006018-RA 174 LREVLICCAEAVSNNDVSTAVALMKVLEKKVSVSGDPIQRLGAYMLEGLRARLERSGSVIYKSLKCEEPT---SSELMSYMSILYEICPYW 261
                         6899*****************************************************************9...999*************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                         kf++  aN  I e +++e+r+HiiDf+i qG QW+ L+qaLa R +gpp  lRiTgv++++s   +   l+ +g++L  fA++++vp+ef+
  WALNUT_00006018-RA 262 KFAYRSANAVIGEVMANERRIHIIDFQIAQGSQWMLLIQALAHRHGGPPlALRITGVDDSQSAhaRGGGLNIVGQKLLAFAKSCQVPLEFH 352
                         *********************************************99999*********9988889999********************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         + +  +  ++ele+L+v++gEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+++eqe+++n+++F+ rf e++eyy+a+f+s
  WALNUT_00006018-RA 353 A-APMSGCEVELENLSVRSGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLIEQESNTNTSPFFPRFKETMEYYTAMFES 442
                         *.899999*********************************************************************************** PP

                GRAS 271 l.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         + +a+ pr+++ ri  E+ +++r+ivn+vace aer+erhe l+kWr+rl++aGF+p+pls+++a+ +  llr ++++ yr+ e+ g+l+l
  WALNUT_00006018-RA 443 IdAAQHPRDDKRRIRAEENCVARDIVNMVACEDAERVERHELLGKWRSRLSMAGFTPYPLSSSVANAVIDLLRSYNEN-YRLAESGGALYL 532
                         *98999**********************************************************************55.************ PP

                GRAS 361 gWkdrpLvsvSaW 373
                         gWk+rp+v+ SaW
  WALNUT_00006018-RA 533 GWKNRPMVTSSAW 545
                         ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.409148527IPR005202Transcription factor GRAS
PfamPF035149.9E-124174545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQEHHSS ASFQGLYHQP LQDPYRLSHF QILENNVSAD MGNQGTSISF EPEQYFTLES  60
SPATDGYIVC DSPSISSGLS NRSPFSPQVS QSYMSDPHRS PENNYGSPAS GSSVADNGNE  120
MRHKLREIEI VLLGSEPDIG NSCYNSLDSG IHQVTSTSRW DLDQLVEMIP RLDLREVLIC  180
CAEAVSNNDV STAVALMKVL EKKVSVSGDP IQRLGAYMLE GLRARLERSG SVIYKSLKCE  240
EPTSSELMSY MSILYEICPY WKFAYRSANA VIGEVMANER RIHIIDFQIA QGSQWMLLIQ  300
ALAHRHGGPP LALRITGVDD SQSAHARGGG LNIVGQKLLA FAKSCQVPLE FHAAPMSGCE  360
VELENLSVRS GEALAVNFPY VLHHMPDESV STQNHRDRLL RLVKSLSPKV VTLIEQESNT  420
NTSPFFPRFK ETMEYYTAMF ESIDAAQHPR DDKRRIRAEE NCVARDIVNM VACEDAERVE  480
RHELLGKWRS RLSMAGFTPY PLSSSVANAV IDLLRSYNEN YRLAESGGAL YLGWKNRPMV  540
TSSAWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-531785458374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828372.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_018828373.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_018828374.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2I4F9P10.0A0A2I4F9P1_JUGRE; scarecrow-like protein 13
STRINGXP_006467309.10.0(Citrus sinensis)
STRINGXP_006475190.10.0(Citrus sinensis)
STRINGXP_006449893.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13