PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005965-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HSF | ||||||||
Protein Properties | Length: 368aa MW: 42219.2 Da PI: 4.678 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.4 | 3.6e-36 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y+i++d+++++++sws +nsfvv+d++ f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ WALNUT_00005965-RA 45 FLTKTYDIVDDQTTDHIVSWSGGNNSFVVWDPQAFSTSLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKH 126 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k+ WALNUT_00005965-RA 127 LLKSIRRRKT 136 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-39 | 38 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-60 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-35 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.2E-32 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MINSQGRLQE GFPGASSSFS GMSSSLKIPP PRPMEGLQET GPPPFLTKTY DIVDDQTTDH 60 IVSWSGGNNS FVVWDPQAFS TSLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF 120 LRGRKHLLKS IRRRKTPQPQ ASQQALDTCI EVGRFGLEGE VDWLRRDKQV LMAELVKLRQ 180 QEQDNRTYLQ AMEDRLTKTE LKQKQTMSFL ARAMQNPNFI KQLVQQKDTR KELEEATTKK 240 RRRRLDQGPL NLEVDELGQG GESFVKVEPQ DHGDMSEFEV SVLDRLVMNV QGPCTGRSQL 300 ENPEEELIEE GEKHERRDKD LDEGYFWETL LNDGCIEEEI GIAGVEEEDE EEVDVLAEQL 360 GYLASSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 43 | 136 | 18 | 122 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 243 | KKRRRR |
2 | 239 | 244 | KRRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018839407.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like isoform X1 | ||||
Swissprot | Q9LUH8 | 1e-132 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2I4G672 | 0.0 | A0A2I4G672_JUGRE; heat stress transcription factor A-6b-like isoform X1 | ||||
STRING | cassava4.1_029306m | 1e-166 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-124 | heat shock transcription factor A6B |