PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005890-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 484aa MW: 53286.3 Da PI: 6.2051

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005890-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.8e-33	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl WALNUT_00005890-RA 263 KPRMRWTPELHECFVEAVKKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 317 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.237	260	320	IPR017930	Myb domain
SuperFamily	SSF46689	6.99E-18	261	317	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-31	262	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-25	263	318	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-9	265	316	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-23	353	400	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MNRNGIISAK QSKATRGVTQ SYYDTLSPVH SFSTAESEVK SLLASECSSS RPSPFIRTES 60 LSSTPSQASQ KYYLESGPSS PLSPGFHVQN SKSTFSRSSL FCTSLYQSSS SSSETHRQLG 120 NLPFLPHPPS YNQSISAVDS TKAPLLFSGD IENQYDLEHS EALMKEFLNL PGDTSDGSLR 180 GVNCTSDGLA LTEQLDLQFL SDELDIAITD HGENPRLDEI YETPQASSKP AIGLTCSQSC 240 CSMVPTPEDV SSQPSPGSAT AHKPRMRWTP ELHECFVEAV KKLDGAEKAT PKGVLKLMNV 300 EGLTIYHVKS HLQKYRLAKY MPEKKEEKKA SSSEEKKASS TCNESDGRRK GSIQITEALR 360 MQMEVQKQLH EQLEVQRALQ LRIEEHARYL QKILEEQQKA GITWVSPQNL SSETDPCHDP 420 ELRPSSPSPP HPAESKTESS SPLASKHKAT DISDSNSQLC SKRIRLEEKE ESGPDRTAVG 480 DAVH

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MNRNGIISAK QSKATRGVTQ SYYDTLSPVH SFSTAESEVK SLLASECSSS RPSPFIRTES  60
LSSTPSQASQ KYYLESGPSS PLSPGFHVQN SKSTFSRSSL FCTSLYQSSS SSSETHRQLG  120
NLPFLPHPPS YNQSISAVDS TKAPLLFSGD IENQYDLEHS EALMKEFLNL PGDTSDGSLR  180
GVNCTSDGLA LTEQLDLQFL SDELDIAITD HGENPRLDEI YETPQASSKP AIGLTCSQSC  240
CSMVPTPEDV SSQPSPGSAT AHKPRMRWTP ELHECFVEAV KKLDGAEKAT PKGVLKLMNV  300
EGLTIYHVKS HLQKYRLAKY MPEKKEEKKA SSSEEKKASS TCNESDGRRK GSIQITEALR  360
MQMEVQKQLH EQLEVQRALQ LRIEEHARYL QKILEEQQKA GITWVSPQNL SSETDPCHDP  420
ELRPSSPSPP HPAESKTESS SPLASKHKAT DISDSNSQLC SKRIRLEEKE ESGPDRTAVG  480
DAVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	263	320	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018839288.1	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_018839289.1	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_018839290.1	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_018839291.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-143	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A2I4G5V9	0.0	A0A2I4G5V9_JUGRE; myb family transcription factor PHL6
STRING	POPTR_0007s15110.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-125	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]