PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005755-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 871aa    MW: 96443.2 Da    PI: 6.7881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005755-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-19310410199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  WALNUT_00005755-RA 310 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID- 398
                         99**************************555556677***************9989999999***9.********************887. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          +++lv++++++
  WALNUT_00005755-RA 399 PGGKLVMGFRKA 410
                         788888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-30306414IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20307409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-23308409No hitNo description
PROSITE profilePS5086311.011310411IPR003340B3 DNA binding domain
SMARTSM010198.3E-23310411IPR003340B3 DNA binding domain
PfamPF023623.7E-16310409IPR003340B3 DNA binding domain
PROSITE profilePS5105013.865575625IPR011124Zinc finger, CW-type
PfamPF074961.8E-10580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MESKICMNAS CGATSTHEWK RGWPLGSGGF ADLCHNCGSA YEDLVFCDMF HLEETGWREC  60
SLCNKRIHCG CIISERSYEY LDFGGVGCNS CVKSSGIYPI WRGDLSNGFG LLAVNNAGDS  120
LSSPFEKRLV SDDEGRLMQL CKIMEADEPN LLPQSERGEV NASQVDLGFS NVTQPSIGSD  180
PFTKPDNSRQ ILEGKDMHES LAKPSLNMTL GTPNFVLPFS GGVVDGREQS KTPSPIQKGQ  240
RSRPILPKPT KTSLTVSSET NKSVAQMRIA RPPAEGRGKN QLLPRYWPRI TDQELEQLSG  300
DLNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QSEGLPLRIQ DVKGNEWTFQ  360
FRFWPNNNSR MYVLEGVTPC IQSMQLRAGD TVTFSRIDPG GKLVMGFRKA SNTADSQDAQ  420
MSALPNGTPS RETSFAGVIE SLPSGSGYSG LFQTMKGSKE PHLNALCENL HLGEGDIGLN  480
KCDNHGDRIN EDSPQQPMHI REKKRTRNIG FKSKRLLMHS EEALELRLTW EEAQDLLRPP  540
SCVKPSIVTI EDHEFEEYDE PPVFGKRTIF TALPSRGPVQ WAQCDNCSKW RRLPVDVLLP  600
PKWTCSENVW DSNRCFCSVP EEISLKQLAN LLRVRKDFKK RRSAESHMSV QEREPASGLD  660
ALACAAVLGD NVGDSGEPSV GATTKHPRHR PGCTCIVCIQ PPSGKGKHKP TCTCNVCMTV  720
KRRFKTLMLR KKKRQSELEA ETGQKDENHL RDESKTNGPS RDGLLPTNFP GNEESHSRNQ  780
LAELAEIGNG QIDLNCHPKR EDMQLDLEVP GMSLQSLVQA ASLPLEDFMK QRRIPTLTCE  840
QQGSLDSCIH PQLVTGESER PGLSDEGRPC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-712884172131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720731KRRFKTLMLRKK
2720733KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415345e-44AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828582.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2I4FAA70.0A0A2I4FAA7_JUGRE; B3 domain-containing transcription repressor VAL1
STRINGXP_010108467.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]