PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005734-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25372.8 Da PI: 8.9689 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.9e-42 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vh++FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+ WALNUT_00005734-RA 42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHRVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQTLQ 132 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e WALNUT_00005734-RA 133 AELNAVRAE 141 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.662 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-42 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSTERERFYD IGKKIKRETD ASSQMGRRHL FGPSGTLNTL TPCAACKLLR RRCAEECPFS 60 PYFSPHEPQK FAAVHRVFGA SNVSKMLMEV PESQRADTAN SLVYEANLRL RDPVYGCMGA 120 ISALQQQIQT LQAELNAVRA EMLQHKFSNF IPSSPAALVS SGAAPVSISH APPHTTLSRP 180 PSPPPPPPNP PVLPPLPSAV TSFSSSSSTS LYTPPSSATG YSSIILNANI QYFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 42 | 145 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 42 | 145 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828456.1 | 1e-171 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-74 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2I4F9X3 | 1e-169 | A0A2I4F9X3_JUGRE; LOB domain-containing protein 15-like | ||||
STRING | cassava4.1_031813m | 1e-101 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-77 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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