PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005734-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 234aa    MW: 25372.8 Da    PI: 8.9689
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005734-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.9e-42421411100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vh++FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+
  WALNUT_00005734-RA  42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHRVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQTLQ 132
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  WALNUT_00005734-RA 133 AELNAVRAE 141
                         ****99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.66241142IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4242139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSTERERFYD IGKKIKRETD ASSQMGRRHL FGPSGTLNTL TPCAACKLLR RRCAEECPFS  60
PYFSPHEPQK FAAVHRVFGA SNVSKMLMEV PESQRADTAN SLVYEANLRL RDPVYGCMGA  120
ISALQQQIQT LQAELNAVRA EMLQHKFSNF IPSSPAALVS SGAAPVSISH APPHTTLSRP  180
PSPPPPPPNP PVLPPLPSAV TSFSSSSSTS LYTPPSSATG YSSIILNANI QYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-424214511114LOB family transfactor Ramosa2.1
5ly0_B1e-424214511114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828456.11e-171PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T51e-74LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2I4F9X31e-169A0A2I4F9X3_JUGRE; LOB domain-containing protein 15-like
STRINGcassava4.1_031813m1e-101(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-77LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]