PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005678-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 346aa MW: 39026.6 Da PI: 9.9989 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.8e-32 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+p+LH++Fv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+ WALNUT_00005678-RA 67 PRLRWNPDLHRCFVQAVERLGGQERATPKLVLQVMNIKGLSIAHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 63 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.349 | 63 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-14 | 65 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-23 | 67 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-8 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MMKSGYIDGS KFKSSSDRSE LDEERSDGDR SKNKNSASSS SNSIVEETDQ KMSSSIGVRP 60 YVRSKVPRLR WNPDLHRCFV QAVERLGGQE RATPKLVLQV MNIKGLSIAH VKSHLQMYRS 120 KKIDDQGQVI TSSRHVMGSA DRLWQQYSKL RGIDQRVSHK FRSYGDLCGN GQGSCVSMPY 180 LTHDRINLTD HSMNIKTRGS HLHDSEAGSW NSGGIDLKIR NGSLYLNNNI GFNNIGFGEQ 240 SIKRLQEFKE KFPWPFNHTS IKTQTSSSPI EIDDSSLSTE LHGRSGQEKT KYFIDSNTAV 300 LNQTKWVVGE EQATAGKRKG FHDDIDLSLS LSIRSRHEGA NKRICW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828498.1 | 0.0 | PREDICTED: myb-related protein 2-like | ||||
TrEMBL | A0A2I4FA32 | 0.0 | A0A2I4FA32_JUGRE; myb-related protein 2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16555 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-44 | G2-like family protein |