PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005639-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 479aa    MW: 52904.9 Da    PI: 5.8555
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005639-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.4e-34255309155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHe+Fveav++LGGsekAtPk +l++mkv+gLt++hvkSHLQkYR+
  WALNUT_00005639-RA 255 KPRMRWTPELHEAFVEAVNKLGGSEKATPKGVLKFMKVEGLTIYHVKSHLQKYRT 309
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.679252312IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-31253311IPR009057Homeodomain-like
SuperFamilySSF466898.42E-18254309IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25255309IPR006447Myb domain, plants
PfamPF002494.4E-10257308IPR001005SANT/Myb domain
PfamPF143791.7E-25340386IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEARPTLSIQ RSGAKQLSNM GISGALSSSL PVLPAPLQET YPKLPDSQHI YMERELVKRP  60
FNHASHLPSD SGVAGHMFSS SPGFSSDLHY SSLSSHEEHS KNSPFISRSS TMRGAFPLTY  120
TSHSISVQST KSSHYAEENS ASWNTDSLPS FLDFPVNTFI ESSQVESSAC NTVLPSEEFG  180
KWADQLISDD VANWNELLGD TNVTDLESKM ACQVSKPSPN FQAHESQVHQ QLPVPSGEIR  240
AIATPTSSAN SATAKPRMRW TPELHEAFVE AVNKLGGSEK ATPKGVLKFM KVEGLTIYHV  300
KSHLQKYRTA RYRPDSSEGS SEKKLTPIED ISTLDLKTGI EITEALRLQI EVQKRLHEQL  360
EIQRNLQLRI EEQGRYLQMM FEKQCKPGMD KLKTSASTTS QNPPVPSSDA VPDSPTKTEL  420
KASQLDHKTG AEPVNANTGL EETSWELGGK EKAPEQEAPQ DFEPDESSSQ PSKRPRTDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-31254313160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827192.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_018827193.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_018827194.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A2I4F6B70.0A0A2I4F6B7_JUGRE; protein PHOSPHATE STARVATION RESPONSE 1-like
STRINGPOPTR_0002s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-86phosphate starvation response 1