PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005570-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 717aa    MW: 78901.8 Da    PI: 6.2619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005570-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000665345711355
                         HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  WALNUT_00005570-RA 534 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 571
                         77899************55......7777779999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3013159IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.56521570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00151526571No hitNo description
Gene3DG3DSA:4.10.280.103.4E-4534581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-5534583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MGGGVGAIGN TELRQVLRSL CLNTDWVYAV FWKLKHRSRM VLTWEDAYYD FHERHDSAGN  60
NCCSKTPDKL HDGHYSHDPL GLAVAKMSYH VYSLGEGIVG QVAVTGKHQW IFADKQITSS  120
RLSFEYCDGW QTQFSAGIRT IAVVPVAPHG VVQLGSLNKQ DVPANSSASV MITDCLRNSD  180
KAIDKEGADV WLSMFPCFGK DRGNSCAFLP HGFYQRKAVE VVYDHERLEL CNSVGDESAQ  240
LHSSNSNIIY LEHQKLVGGR TCGGDINGCK DTEGGSEPNF HSLSHGSAVV SVNLSDVIPP  300
ADQNLLESAV CDRIKLDGKD FYKNGLLQIP ETSDMKFDKD SEKLQFQAES SHMDILNTSL  360
HFPAGYELHE ALGPAFLKTS NYLNWESAKT EDGVIIEMPE GMSSSQLTSN YYPDHLLEAV  420
VSNVCQSDSD VKSDKLLSKP VQSLSTTEVN PESSGHTVDA ITSVHYPFEQ PSHLEDKQHC  480
LSSSGVCGVI SPTSFSSNCT STCSKHLERS SEPAKNNKKR SRPGENSRPR PRDRQLIQDR  540
IKELRELVPN GSKCSIDSLL ERTIKHMLFL QSVTKHADKL NKCTNSKLHD KGTAGIIGSS  600
GAEHGSSWAV EVGGHLKVCS IIVENLNKSG QMLVEMLCED CSHFLEIAET IRSLGLTILK  660
GATEAEGEKT WICFVVEVGP EQQKHTQNGY IVVPCPNIAT QNSNATMMAC RLLEIFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827228.10.0PREDICTED: transcription factor bHLH155-like isoform X1
TrEMBLA0A2I4F6G10.0A0A2I4F6G1_JUGRE; transcription factor bHLH155-like isoform X1
STRINGXP_008235701.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.31e-158conserved peptide upstream open reading frame 7