PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005552-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 507aa    MW: 56024.9 Da    PI: 5.9163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005552-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13361407455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  WALNUT_00005552-RA 361 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 407
                         799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4248233IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-18356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-14360411No hitNo description
PfamPF000101.5E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-18361423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAEKFWLNEE DRAMMESVLG TEACEFLVAS ASENVISNLV TPSGDLGLQQ GLSQLVRRSD  60
WNYAVFWRVV SLKSGSSALI WGDGHFCDPE GGGAGDRNRG EDNNLDGVGR KEEVKKLVLQ  120
KLHASFGRSD EENFAARLNG VSDVEMFYLT SMYFTFRCDS SRGLGESYIS GKSIWASDLP  180
SCLRHYQQRS FLAGAAGFQT VVFVPVKSGV VEFGSIKSIP EEQNTVDMVK TIFGESNSAQ  240
SKVLPKIFGH ELSLGGTKSC SVNINFSPKV EDDSGFTPDT FDVQTRGTNT IYGNSSNGCR  300
SDDNEAKLFP RLNQMAVGGF NPQTIVSSME IAKDDSSSQP DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYINDLQMKI RVLETEKEVV  420
EKSKHKQLSA TEIDFQARQE DSVVRIGCPL DAHPVSGVIQ AFREHQIVAQ DSNVSTENGK  480
VIHTFSIRTQ GGTAELLKEE LVAALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29355417264Transcription factor MYC2
5gnj_B4e-29355417264Transcription factor MYC2
5gnj_E4e-29355417264Transcription factor MYC2
5gnj_F4e-29355417264Transcription factor MYC2
5gnj_G4e-29355417264Transcription factor MYC2
5gnj_I4e-29355417264Transcription factor MYC2
5gnj_M4e-29355417264Transcription factor MYC2
5gnj_N4e-29355417264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827271.10.0PREDICTED: transcription factor bHLH3
RefseqXP_018827272.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2I4F6J30.0A0A2I4F6J3_JUGRE; transcription factor bHLH3
STRINGXP_006479569.10.0(Citrus sinensis)
STRINGXP_006443887.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-170bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]