PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005459-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 333aa    MW: 37048.2 Da    PI: 6.8847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005459-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
  WALNUT_00005459-RA 14 RGPWSPEEDAKLKEYIDKYGTGrNWISLPQKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding36.98.7e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00005459-RA  69 GDFSDDEDRIICSLFAAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.36966IPR017930Myb domain
SuperFamilySSF466895.35E-2711109IPR009057Homeodomain-like
SMARTSM007174.5E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241569IPR009057Homeodomain-like
CDDcd001674.96E-91662No hitNo description
SMARTSM007173.1E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129417.02967117IPR017930Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2270117IPR009057Homeodomain-like
CDDcd001671.67E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRAPCCDKS NVKRGPWSPE EDAKLKEYID KYGTGRNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC SLFAAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLEGM  120
FPQAQRKNLH STLLKISASS ISSSATPTIS YKGSNSTSYY TPTTAFTEME PFSFTSSSLR  180
DNYSSYAAPF LQDQENYVAQ QQNYLVKDIQ PSFGSEVSCS SSDRSSNNLI SHSKEGDFEY  240
GGGSTGVGAV ETCGEGQVLG LKNCFFNGAQ GNQSSLMTSN GGDNVNDWME KQNGMWEETP  300
LDYGLEEIKQ LISSTGGNSV LFDEHKTQEK MLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141187109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832373.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2I4FL680.0A0A2I4FL68_JUGRE; transcription factor RAX2-like
STRINGPOPTR_0006s12530.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-77myb domain protein 36