PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005377-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 560aa    MW: 59811.4 Da    PI: 7.7754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005377-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.3e-1296121227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C +++rtG+C yG+rC+F+H++
  WALNUT_00005377-RA  96 DEADCIYYLRTGFCGYGSRCRFNHPR 121
                         6799********************96 PP
2zf-CCCH37.83.2e-12143167327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtG Ck+G++Ck++H++
  WALNUT_00005377-RA 143 QPVCQYYMRTGACKFGASCKYHHPR 167
                         689********************96 PP
3zf-CCCH33.85.7e-11187212227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++ +tG+Ck+G++CkF+H++
  WALNUT_00005377-RA 187 GEKECSYYVKTGQCKFGGTCKFHHPQ 212
                         6789********************97 PP
4zf-CCCH35.81.4e-11348373227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C++++rtG Ck+G++C+++H+p
  WALNUT_00005377-RA 348 GQQECPHYMRTGDCKFGSSCRYHHPP 373
                         6789********************97 PP
5zf-CCCH32.12e-10432454426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C ++a+ G Ck+G+ CkF H+
  WALNUT_00005377-RA 432 PPCTHYAQRGVCKFGPACKFDHP 454
                         89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-594121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.29594122IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-996121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5100121IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6143168IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5145167IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249185213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6187213IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8187212IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6346373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305346374IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9348373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5352373IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126429456IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8431454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4433453IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5433458IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MERYGRTTEG SMSDPSPEWT APGPETGLEG KLGDPAFQFH CCFDRNPLLS GDLDSEISVE  60
CMRAILGFDL LCVLRNVEPM WQLGLGGPES YPERPDEADC IYYLRTGFCG YGSRCRFNHP  120
RDRGAVIGAA RPGGGEYPER VGQPVCQYYM RTGACKFGAS CKYHHPRQGG ESTPVSLNYF  180
GYPLRQGEKE CSYYVKTGQC KFGGTCKFHH PQPAGIQVPP LSLAPPVAAM PTQALHPGVR  240
SSSVPSSQQY GVVVARPPLL SGSYVQSPYG PVLLPSMVPF PGWNPYPVPI SPVPSPSSQP  300
SVGSGPLYGM TPLYPAASAY TGTYQPVPSS VGPPGSSQKE YSFPERPGQQ ECPHYMRTGD  360
CKFGSSCRYH HPPELVAPKR NVVLNLIGLP LRPRVEPCLP NWLSGQNRKD TCLLELLLSF  420
SDQGWGVCQG APPCTHYAQR GVCKFGPACK FDHPTGTLSY SPSASSLADM PVAPYPVGSS  480
IGMLAPSSSS SELRPELISG SSKDSVSSRM SSSTSTSSGS IGSTFSKSEP IHHLTVQQSA  540
HGSGPSTGSS SGGTGFLSSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826123.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-151C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2I4F3A90.0A0A2I4F3A9_JUGRE; zinc finger CCCH domain-containing protein 34-like
STRINGXP_008223126.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-131C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]