PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005217-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 22845 Da PI: 8.8372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l ++++ +G ++W+ a+t g++R++k+c++rw++yl WALNUT_00005217-RA 16 KGTWTAEEDQKLSQYIEIHGAKRWEIAAATAGLNRCGKSCRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l WALNUT_00005217-RA 69 RGNISDAEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114 788999****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.014 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-28 | 15 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.78 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPKNVGSSA KKVMNKGTWT AEEDQKLSQY IEIHGAKRWE IAAATAGLNR CGKSCRLRWL 60 NYLRPNIKRG NISDAEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLNKKINR 120 AMIEKTLEVP TAAVLLRDRT EITMPQKSGA SINDQVGIEA AGGHVKENGN TELAANSEFT 180 ELGSCTGLEW ANKFLELDDD AWLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018825037.1 | 1e-149 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | A0A2I4F061 | 1e-148 | A0A2I4F061_JUGRE; transcription factor MYB114-like | ||||
STRING | EOY24284 | 4e-78 | (Theobroma cacao) | ||||
STRING | XP_008356551.1 | 1e-78 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-53 | myb domain protein 5 |