PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005162-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 389aa    MW: 42861.9 Da    PI: 8.5118
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005162-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-4092168278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++yhrrhkvCe hsk+p+v + g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  WALNUT_00005162-RA  92 CLVDGCTSDLSNCRDYHRRHKVCELHSKTPQVSICGRKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 168
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-3384153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.69389166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3790171IPR004333Transcription factor, SBP-box
PfamPF031102.1E-2992165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDWHLKAPWG LTELEQETFP NTQTIGGSSS FGGHRTSKVE FSVDLKLGQL GNSANELLNK  60
WKEPEVSKIS SPASGSSKRA RAANNGNQPV SCLVDGCTSD LSNCRDYHRR HKVCELHSKT  120
PQVSICGRKQ RFCQQCSRFH SLEEFDEGKR SCRKRLDGHN RRRRKPQPEP LSRSGNFLSN  180
YQGVQLIPFS SSHVYPPTTM VSPAWAGVLN TAADARLHNQ QQQLWLLDKE KLFLGSSPST  240
HSANHLGGKQ MSFLQGGSTM LNHHSSLEAP VCQPLLKTIA LSESGVARSK MFGDRLTTQV  300
HDSDCALSLL SSPPAQSSGH ALNHEVHPNS VSLVQPLGSS LHGNSLDPMN SVLMSSGSDS  360
NIHCRGRFHM GSEESQLNET PQTFSFNWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-28921651184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825174.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A2I4F0J80.0A0A2I4F0J8_JUGRE; squamosa promoter-binding-like protein 13A isoform X2
STRINGEMJ104051e-166(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-75SBP family protein