PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005007-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 1088aa MW: 123340 Da PI: 9.9489 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.3e-19 | 61 | 150 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fk+ +d+l++g l++p++f+++hg + s l+ ++g +W+++l ++++g+ +l+kGW+eF + +k g f+vF+++g+s+f WALNUT_00005007-RA 61 FKII-LADSLRHGKLMIPRRFVRKHG--EGLSNLAFLNLPNGAEWKLEL--TRCDGELWLQKGWQEFLEYYSVKPGHFLVFRYEGNSRF-- 144 4444.48999***************8..44776777777**********..**********************************9999.. PP EEEEE- CS B3 93 vvkvfr 98 +v +f+ WALNUT_00005007-RA 145 HVLIFD 150 999997 PP | |||||||
2 | B3 | 42.1 | 1.6e-13 | 310 | 399 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f v+ ps+v +l +p kfa+++ +k + +++l+ ++gr W vk+ + ++ ++ +Wk+F +n+Lk+gD++ F+l++ + + WALNUT_00005007-RA 310 FMVVMQPSYVQFGWCLNIPSKFAKTYLNK-MLG-DVVLRVSDGRNWFVKY--SAGK--IL---CWKQFSLDNNLKVGDVCAFELIKGIKVS 391 778999*******99********999544.454.8***************..5554..33...7*********************886666 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++v +fr+ WALNUT_00005007-RA 392 FKVVIFRA 399 79999886 PP | |||||||
3 | B3 | 53.2 | 5.4e-17 | 436 | 517 | 6 | 86 |
..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ++ +++l +p kfae++ + +k++ ++l + g++W v++i ++ + + l+ GW+ F+++n+L+egD++vF+l++ WALNUT_00005007-RA 436 GTLYAYGRSNLHIPCKFAEKYlSDQKPG--NVILLVSGGKTWPVRYISrdFGSHRNTELSIGWRAFARDNKLEEGDVCVFELMK 517 5667777888***********7555444..6***************886544444589***********************875 PP | |||||||
4 | B3 | 49.2 | 9.6e-16 | 522 | 609 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 t+s+ + ++ ++p +f++++g++ s ++ ++g +W+++l k++g+++l+kGW+eFv+ Lk g f+vF+++g+s f +v v WALNUT_00005007-RA 522 TNSHQSLDSLQRIPTRFIRRYGES--LSNLALIKLPNGAEWKLEL--AKCDGEVWLKKGWREFVEYSSLKLGHFLVFRYEGKSHF--CVLV 606 456666666779*********965..777777788**********..*********************************99999..9999 PP E-S CS B3 97 frk 99 f++ WALNUT_00005007-RA 607 FDE 609 986 PP | |||||||
5 | B3 | 61.2 | 1.7e-19 | 764 | 858 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ v+ s+v + +++p fa++h +kk +++l ++gr+W+v+++++++ ++ +++GWkeFv++n+L++gD++ F+l++ + + WALNUT_00005007-RA 764 FDVVMQASYVRFGC-VSIPSGFAKRHLNKKL--DDIILWLSDGRRWSVRYKFNRRA-ACQFGGGWKEFVQDNNLDVGDVCSFELIKGIKIS 850 56677777777777.***********65543..38999999*********875554.6779***********************9876666 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v +fr+ WALNUT_00005007-RA 851 FQVVIFRA 858 78888875 PP | |||||||
6 | B3 | 47.8 | 2.6e-15 | 1014 | 1075 | 37 | 98 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + +sW vk++ + + vl++GW+ Fvkan L++gD++vF+l+++++ l+v++fr WALNUT_00005007-RA 1014 VMLQVGEKSWPVKFNSYPHLSYAVLSAGWRTFVKANSLQVGDVCVFELIKSDDVMLKVSIFR 1075 3455578*******77777777***************************999999***9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-24 | 55 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-24 | 56 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.72E-19 | 58 | 150 | No hit | No description |
PROSITE profile | PS50863 | 13.775 | 59 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-19 | 60 | 152 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 61 | 150 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 303 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-18 | 304 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-20 | 308 | 398 | No hit | No description |
SMART | SM01019 | 3.3E-11 | 310 | 400 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-11 | 310 | 399 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.532 | 310 | 400 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-21 | 424 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-20 | 425 | 517 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-20 | 429 | 518 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 431 | 530 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-7 | 431 | 521 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 433 | 517 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 521 | 610 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.87E-15 | 521 | 608 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-19 | 522 | 609 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-9 | 522 | 610 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-13 | 523 | 609 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 534 | 610 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-25 | 757 | 859 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-23 | 757 | 858 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.41E-21 | 762 | 857 | No hit | No description |
PROSITE profile | PS50863 | 14.452 | 763 | 859 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-15 | 764 | 859 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-17 | 766 | 858 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.59E-16 | 978 | 1075 | No hit | No description |
SMART | SM01019 | 2.0E-10 | 987 | 1077 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-14 | 1004 | 1075 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-13 | 1006 | 1077 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-12 | 1013 | 1075 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 1021 | 1077 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1088 aa Download sequence Send to blast |
MIRCQAKADF LSAIGLIALH QPSMNSDPPI YSPSEASSTM ASQGQRDDQS PGVEVKAPHF 60 FKIILADSLR HGKLMIPRRF VRKHGEGLSN LAFLNLPNGA EWKLELTRCD GELWLQKGWQ 120 EFLEYYSVKP GHFLVFRYEG NSRFHVLIFD MSATEVDYPT HSSQVKGKNF GEKLQVSPKE 180 ETENDSSVEI LDSFRTYKRR EKLPCDPRPQ KMKRTNPSAK TKKISNLPKW VPHSTPNRTQ 240 SEEVKPKKLT AQGNLHPTKQ EFEGHVEGIS TNEVGCPKSE VLTRTRPLTL IEKARALKKA 300 SGFKRENPYF MVVMQPSYVQ FGWCLNIPSK FAKTYLNKML GDVVLRVSDG RNWFVKYSAG 360 KILCWKQFSL DNNLKVGDVC AFELIKGIKV SFKVVIFRAN EEQCPLLPGT ATEKARALER 420 AIAFNSQNPF FMVSMGTLYA YGRSNLHIPC KFAEKYLSDQ KPGNVILLVS GGKTWPVRYI 480 SRDFGSHRNT ELSIGWRAFA RDNKLEEGDV CVFELMKGIG VTNSHQSLDS LQRIPTRFIR 540 RYGESLSNLA LIKLPNGAEW KLELAKCDGE VWLKKGWREF VEYSSLKLGH FLVFRYEGKS 600 HFCVLVFDES ATEIDYPFNS SPGEDLKIHE KLPVSRMEEM ESDSSVEILD DFPAYPKARE 660 KSPLSCPRPH KMMRTNSSAQ IGSTANLSRL VPHSTKNKSK EANLKKSKGQ VKFHSTMQEF 720 EGVEGTTKKS PKSEVLRRIP NMTADEKAKD LQKARGIKPE NPHFDVVMQA SYVRFGCVSI 780 PSGFAKRHLN KKLDDIILWL SDGRRWSVRY KFNRRAACQF GGGWKEFVQD NNLDVGDVCS 840 FELIKGIKIS FQVVIFRATE EHCPKLPKSE SDSSVKILDD FPAYPKMREK SLLSCPRPHK 900 MMRMNPSAKT GNTLSRLVPH CTQNQCKEAK LDKFKGQSNL HSTKQDCEGV EGVSATSQCP 960 ESKVPRRTQT VYEKSSALQK AMISGRFMLT VTSNISPVQA VLRSFLNIKS GQRVMLQVGE 1020 KSWPVKFNSY PHLSYAVLSA GWRTFVKANS LQVGDVCVFE LIKSDDVMLK VSIFRCPTTP 1080 SLELFFQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-19 | 284 | 860 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-19 | 284 | 860 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826361.1 | 0.0 | PREDICTED: uncharacterized protein LOC108995281 | ||||
TrEMBL | A0A2I4F3Y0 | 0.0 | A0A2I4F3Y0_JUGRE; uncharacterized protein LOC108995281 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-48 | B3 family protein |