PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005007-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 1088aa    MW: 123340 Da    PI: 9.9489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005007-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.3e-1961150298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk+   +d+l++g l++p++f+++hg  +  s    l+ ++g +W+++l  ++++g+ +l+kGW+eF +   +k g f+vF+++g+s+f  
  WALNUT_00005007-RA  61 FKII-LADSLRHGKLMIPRRFVRKHG--EGLSNLAFLNLPNGAEWKLEL--TRCDGELWLQKGWQEFLEYYSVKPGHFLVFRYEGNSRF-- 144
                         4444.48999***************8..44776777777**********..**********************************9999.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v +f+
  WALNUT_00005007-RA 145 HVLIFD 150
                         999997 PP
2B342.11.6e-13310399199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f  v+ ps+v    +l +p kfa+++ +k   + +++l+ ++gr W vk+  + ++  ++   +Wk+F  +n+Lk+gD++ F+l++  + +
  WALNUT_00005007-RA 310 FMVVMQPSYVQFGWCLNIPSKFAKTYLNK-MLG-DVVLRVSDGRNWFVKY--SAGK--IL---CWKQFSLDNNLKVGDVCAFELIKGIKVS 391
                         778999*******99********999544.454.8***************..5554..33...7*********************886666 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         ++v +fr+
  WALNUT_00005007-RA 392 FKVVIFRA 399
                         79999886 PP
3B353.25.4e-17436517686
                         ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          + ++  +++l +p kfae++ + +k++   ++l  + g++W v++i    ++ + + l+ GW+ F+++n+L+egD++vF+l++
  WALNUT_00005007-RA 436 GTLYAYGRSNLHIPCKFAEKYlSDQKPG--NVILLVSGGKTWPVRYISrdFGSHRNTELSIGWRAFARDNKLEEGDVCVFELMK 517
                         5667777888***********7555444..6***************886544444589***********************875 PP
4B349.29.6e-16522609699
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         t+s+ +  ++ ++p +f++++g++   s    ++ ++g +W+++l   k++g+++l+kGW+eFv+   Lk g f+vF+++g+s f  +v v
  WALNUT_00005007-RA 522 TNSHQSLDSLQRIPTRFIRRYGES--LSNLALIKLPNGAEWKLEL--AKCDGEVWLKKGWREFVEYSSLKLGHFLVFRYEGKSHF--CVLV 606
                         456666666779*********965..777777788**********..*********************************99999..9999 PP

                         E-S CS
                  B3  97 frk 99 
                         f++
  WALNUT_00005007-RA 607 FDE 609
                         986 PP
5B361.21.7e-19764858199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ v+  s+v   + +++p  fa++h +kk    +++l  ++gr+W+v+++++++  ++ +++GWkeFv++n+L++gD++ F+l++  + +
  WALNUT_00005007-RA 764 FDVVMQASYVRFGC-VSIPSGFAKRHLNKKL--DDIILWLSDGRRWSVRYKFNRRA-ACQFGGGWKEFVQDNNLDVGDVCSFELIKGIKIS 850
                         56677777777777.***********65543..38999999*********875554.6779***********************9876666 PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         + v +fr+
  WALNUT_00005007-RA 851 FQVVIFRA 858
                         78888875 PP
6B347.82.6e-15101410753798
                          EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98  
                          ++ +   +sW vk++   + +  vl++GW+ Fvkan L++gD++vF+l+++++  l+v++fr
  WALNUT_00005007-RA 1014 VMLQVGEKSWPVKFNSYPHLSYAVLSAGWRTFVKANSLQVGDVCVFELIKSDDVMLKVSIFR 1075
                          3455578*******77777777***************************999999***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2455152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-2456152IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-1958150No hitNo description
PROSITE profilePS5086313.77559152IPR003340B3 DNA binding domain
SMARTSM010191.9E-1960152IPR003340B3 DNA binding domain
PfamPF023622.0E-1561150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19303400IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-18304400IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-20308398No hitNo description
SMARTSM010193.3E-11310400IPR003340B3 DNA binding domain
PfamPF023621.2E-11310399IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532310400IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-21424517IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20425517IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-20429518No hitNo description
PROSITE profilePS5086313.465431530IPR003340B3 DNA binding domain
SMARTSM010193.6E-7431521IPR003340B3 DNA binding domain
PfamPF023621.5E-15433517IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-20521610IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-15521608No hitNo description
SuperFamilySSF1019363.53E-19522609IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-9522610IPR003340B3 DNA binding domain
PfamPF023623.7E-13523609IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943534610IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-25757859IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-23757858IPR015300DNA-binding pseudobarrel domain
CDDcd100178.41E-21762857No hitNo description
PROSITE profilePS5086314.452763859IPR003340B3 DNA binding domain
SMARTSM010191.7E-15764859IPR003340B3 DNA binding domain
PfamPF023624.1E-17766858IPR003340B3 DNA binding domain
CDDcd100179.59E-169781075No hitNo description
SMARTSM010192.0E-109871077IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-1410041075IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-1310061077IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1210131075IPR003340B3 DNA binding domain
PROSITE profilePS5086312.02610211077IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1088 aa     Download sequence    Send to blast
MIRCQAKADF LSAIGLIALH QPSMNSDPPI YSPSEASSTM ASQGQRDDQS PGVEVKAPHF  60
FKIILADSLR HGKLMIPRRF VRKHGEGLSN LAFLNLPNGA EWKLELTRCD GELWLQKGWQ  120
EFLEYYSVKP GHFLVFRYEG NSRFHVLIFD MSATEVDYPT HSSQVKGKNF GEKLQVSPKE  180
ETENDSSVEI LDSFRTYKRR EKLPCDPRPQ KMKRTNPSAK TKKISNLPKW VPHSTPNRTQ  240
SEEVKPKKLT AQGNLHPTKQ EFEGHVEGIS TNEVGCPKSE VLTRTRPLTL IEKARALKKA  300
SGFKRENPYF MVVMQPSYVQ FGWCLNIPSK FAKTYLNKML GDVVLRVSDG RNWFVKYSAG  360
KILCWKQFSL DNNLKVGDVC AFELIKGIKV SFKVVIFRAN EEQCPLLPGT ATEKARALER  420
AIAFNSQNPF FMVSMGTLYA YGRSNLHIPC KFAEKYLSDQ KPGNVILLVS GGKTWPVRYI  480
SRDFGSHRNT ELSIGWRAFA RDNKLEEGDV CVFELMKGIG VTNSHQSLDS LQRIPTRFIR  540
RYGESLSNLA LIKLPNGAEW KLELAKCDGE VWLKKGWREF VEYSSLKLGH FLVFRYEGKS  600
HFCVLVFDES ATEIDYPFNS SPGEDLKIHE KLPVSRMEEM ESDSSVEILD DFPAYPKARE  660
KSPLSCPRPH KMMRTNSSAQ IGSTANLSRL VPHSTKNKSK EANLKKSKGQ VKFHSTMQEF  720
EGVEGTTKKS PKSEVLRRIP NMTADEKAKD LQKARGIKPE NPHFDVVMQA SYVRFGCVSI  780
PSGFAKRHLN KKLDDIILWL SDGRRWSVRY KFNRRAACQF GGGWKEFVQD NNLDVGDVCS  840
FELIKGIKIS FQVVIFRATE EHCPKLPKSE SDSSVKILDD FPAYPKMREK SLLSCPRPHK  900
MMRMNPSAKT GNTLSRLVPH CTQNQCKEAK LDKFKGQSNL HSTKQDCEGV EGVSATSQCP  960
ESKVPRRTQT VYEKSSALQK AMISGRFMLT VTSNISPVQA VLRSFLNIKS GQRVMLQVGE  1020
KSWPVKFNSY PHLSYAVLSA GWRTFVKANS LQVGDVCVFE LIKSDDVMLK VSIFRCPTTP  1080
SLELFFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1928486023144B3 domain-containing transcription factor VRN1
4i1k_B3e-1928486023144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826361.10.0PREDICTED: uncharacterized protein LOC108995281
TrEMBLA0A2I4F3Y00.0A0A2I4F3Y0_JUGRE; uncharacterized protein LOC108995281
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-48B3 family protein