PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005006-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 396aa    MW: 45473.3 Da    PI: 9.9889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005006-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-155811698
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         ++p++f+++hg  +  s    l+ ++g +W+++l  ++ +g+++l+kGW+eF +   +k g f+vF+++g+s+f  ++ +f+
  WALNUT_00005006-RA  5 QMIPRRFVRKHG--EGLSNLAFLNLPNGAEWKLEL--TRFDGEIWLQKGWQEFMEYYSVKPGHFLVFRYEGNSRF--HILIFD 81
                        48*********8..44776777777**********..**********************************9999..998887 PP

2B342.31.4e-131752491699
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +p kfa+++ +k + + +++l+ ++gr W vk+  + ++    l  +Wk+F  +n+Lk+gD++vF+l++  + +++v +fr+
  WALNUT_00005006-RA 175 ENIPSKFAKTYLNK-TLG-DVVLRVSDGRNWFVKY--SAGK----LL-CWKDFSLDNNLKVGDVCVFELIKGIKVSFKVVIFRA 249
                         369*****999544.555.9***************..5555....33.7*********************88666679999886 PP

3B356.74.2e-18286367686
                         ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          + ++  +++l +p kfae++ + +k++   ++l  + g++W v++i    ++++++ l+ GW+ F+++n+L+egD++vF+l++
  WALNUT_00005006-RA 286 GTLYAYGRSNLNIPCKFAEKYlSDQKPG--NVILLVSGGKTWHVQYISrdFGSRRKTELSIGWRAFARDNKLEEGDVCVFELMK 367
                         5667777888***********7555444..6***************887656666699***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.1E-7183IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015183IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-19583IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19683IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-12681IPR003340B3 DNA binding domain
CDDcd100177.15E-13681No hitNo description
SMARTSM010192.8E-6160250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15167250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-14170250IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-11176249IPR003340B3 DNA binding domain
CDDcd100171.07E-15177248No hitNo description
PROSITE profilePS508639.573177250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-22274368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20275367IPR015300DNA-binding pseudobarrel domain
CDDcd100178.96E-21279368No hitNo description
PROSITE profilePS5086313.578281382IPR003340B3 DNA binding domain
SMARTSM010191.3E-8281377IPR003340B3 DNA binding domain
PfamPF023622.6E-16283367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDSLQMIPRR FVRKHGEGLS NLAFLNLPNG AEWKLELTRF DGEIWLQKGW QEFMEYYSVK  60
PGHFLVFRYE GNSRFHILIF DMSATEIDYP THSSQIKGGK FGEKLQVSPK EETENDSSME  120
ILDNFRTYKR REKLPCDPRP QKMKRTNPSA KTEKISNLPK WVPHSSTPNR TQSKENIPSK  180
FAKTYLNKTL GDVVLRVSDG RNWFVKYSAG KLLCWKDFSL DNNLKVGDVC VFELIKGIKV  240
SFKVVIFRAN EEQCPLLPGT ATEKARALER AIAFNSQNPF FMVSMGTLYA YGRSNLNIPC  300
KFAEKYLSDQ KPGNVILLVS GGKTWHVQYI SRDFGSRRKT ELSIGWRAFA RDNKLEEGDV  360
CVFELMKGIG VTNSHQSLGK RSECTSISKQ QILKYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826360.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2I4F3Y10.0A0A2I4F3Y1_JUGRE; B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-31B3 family protein