PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005006-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 396aa MW: 45473.3 Da PI: 9.9889 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 5 | 81 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p++f+++hg + s l+ ++g +W+++l ++ +g+++l+kGW+eF + +k g f+vF+++g+s+f ++ +f+ WALNUT_00005006-RA 5 QMIPRRFVRKHG--EGLSNLAFLNLPNGAEWKLEL--TRFDGEIWLQKGWQEFMEYYSVKPGHFLVFRYEGNSRF--HILIFD 81 48*********8..44776777777**********..**********************************9999..998887 PP | |||||||
2 | B3 | 42.3 | 1.4e-13 | 175 | 249 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p kfa+++ +k + + +++l+ ++gr W vk+ + ++ l +Wk+F +n+Lk+gD++vF+l++ + +++v +fr+ WALNUT_00005006-RA 175 ENIPSKFAKTYLNK-TLG-DVVLRVSDGRNWFVKY--SAGK----LL-CWKDFSLDNNLKVGDVCVFELIKGIKVSFKVVIFRA 249 369*****999544.555.9***************..5555....33.7*********************88666679999886 PP | |||||||
3 | B3 | 56.7 | 4.2e-18 | 286 | 367 | 6 | 86 |
..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ++ +++l +p kfae++ + +k++ ++l + g++W v++i ++++++ l+ GW+ F+++n+L+egD++vF+l++ WALNUT_00005006-RA 286 GTLYAYGRSNLNIPCKFAEKYlSDQKPG--NVILLVSGGKTWHVQYISrdFGSRRKTELSIGWRAFARDNKLEEGDVCVFELMK 367 5667777888***********7555444..6***************887656666699***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.1E-7 | 1 | 83 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-19 | 5 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 6 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.6E-12 | 6 | 81 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.15E-13 | 6 | 81 | No hit | No description |
SMART | SM01019 | 2.8E-6 | 160 | 250 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-15 | 167 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-14 | 170 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-11 | 176 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.07E-15 | 177 | 248 | No hit | No description |
PROSITE profile | PS50863 | 9.573 | 177 | 250 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-22 | 274 | 368 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-20 | 275 | 367 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.96E-21 | 279 | 368 | No hit | No description |
PROSITE profile | PS50863 | 13.578 | 281 | 382 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-8 | 281 | 377 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 283 | 367 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDSLQMIPRR FVRKHGEGLS NLAFLNLPNG AEWKLELTRF DGEIWLQKGW QEFMEYYSVK 60 PGHFLVFRYE GNSRFHILIF DMSATEIDYP THSSQIKGGK FGEKLQVSPK EETENDSSME 120 ILDNFRTYKR REKLPCDPRP QKMKRTNPSA KTEKISNLPK WVPHSSTPNR TQSKENIPSK 180 FAKTYLNKTL GDVVLRVSDG RNWFVKYSAG KLLCWKDFSL DNNLKVGDVC VFELIKGIKV 240 SFKVVIFRAN EEQCPLLPGT ATEKARALER AIAFNSQNPF FMVSMGTLYA YGRSNLNIPC 300 KFAEKYLSDQ KPGNVILLVS GGKTWHVQYI SRDFGSRRKT ELSIGWRAFA RDNKLEEGDV 360 CVFELMKGIG VTNSHQSLGK RSECTSISKQ QILKYI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826360.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A2I4F3Y1 | 0.0 | A0A2I4F3Y1_JUGRE; B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-31 | B3 family protein |