PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004996-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 336aa    MW: 35644.6 Da    PI: 9.577
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004996-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.4e-3973130360
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                         +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k+
  WALNUT_00004996-RA  73 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKS 130
                         68899**************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2572129IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3274130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.43276130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGSTRKRLKM IQELLGGASL NIAGERKIST NGGVLQAIPS SSISPAVLPS SSSSSTTSTT  60
TATTTTTTSN SDNQNLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP  120
IGGGCRKSKS PTISTSVGKS SSGRMKSISS EIGRSGLGCG FDPELSTGPI LWGSPQNSHL  180
LALLRSTQNP NPNPFSNSVN VKEEGNMIGS HMMTEPAVTA GGLNARTLGL DPLGQVPSLG  240
LCGSFWRNNQ HQAQQQNGLV IGEVQNSGIQ ELYQRLRSST NYYADHSSVV LGNVASSSNS  300
SSSSILESAS LAGGELGYWN PTFSWSDLPT TNGAYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-48AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826400.10.0PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBLA0A2I4F4180.0A0A2I4F418_JUGRE; dof zinc finger protein DOF5.3-like
STRINGPOPTR_0007s11620.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.18e-33Dof family protein