PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004851-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YC | ||||||||
Protein Properties | Length: 218aa MW: 24513.5 Da PI: 10.2555 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.1 | 1.1e-14 | 109 | 200 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++++++d+k h++P+ rik i+++++ +++ ea ++ ka e f+ ++t ++ + ++++l +++++ t +dfl d vp+ WALNUT_00004851-RA 109 EEVGEKQDVKTHRFPMHRIKTIIRSENSDLRVTQEALFVVNKATEKFLEQFTKDAYSCCVGDRKKSLAYKHLSSVICTTRRYDFLSDFVPE 199 568899*********************999***********************************************************98 PP NF-YC 99 d 99 + WALNUT_00004851-RA 200 K 200 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.44E-17 | 110 | 203 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-15 | 121 | 183 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.7E-22 | 122 | 199 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MASSKQSAAE KKTKATKLTK SSKKQNGIVT TKRNPEKNNK TANGTVSHSN GFVSIPSSSV 60 ESQEDGEQGR SRSAGTSKRA RVTKPTKGKR KQREEEVNDV VGQREEEEEE VGEKQDVKTH 120 RFPMHRIKTI IRSENSDLRV TQEALFVVNK ATEKFLEQFT KDAYSCCVGD RKKSLAYKHL 180 SSVICTTRRY DFLSDFVPEK IKAENALAER KLNETEVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819559.1 | 1e-159 | PREDICTED: DNA polymerase epsilon subunit C-like | ||||
TrEMBL | A0A2I4EJI4 | 1e-157 | A0A2I4EJI4_JUGRE; DNA polymerase epsilon subunit C-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 9e-34 | nuclear factor Y, subunit C10 |