PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004708-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 990aa MW: 108140 Da PI: 6.18 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.6 | 1.9e-20 | 61 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l WALNUT_00004708-RA 61 KGPWSKEEDEVIIKLVNKHGPKKWSTIAQHLP-GRIGKQCRERWHNHL 107 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 113 | 155 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ ++ gR+++ +k++w+ WALNUT_00004708-RA 113 KEAWTQEEELALIHAHQIYGNK-WAELAKLLP-GRSDNAIKNHWN 155 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 44 | 7 | 57 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.519 | 11 | 55 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 36 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 33.132 | 56 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-31 | 58 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-19 | 60 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-18 | 61 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.47E-17 | 63 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 68 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.704 | 112 | 162 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-16 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 113 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-12 | 115 | 155 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 115 | 162 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 990 aa Download sequence Send to blast |
MQLYLFVKKL WKVTEKSTLH KMSLAMVIRK RDLCMAECFK DRTDVQCLHR WQKVLNPELV 60 KGPWSKEEDE VIIKLVNKHG PKKWSTIAQH LPGRIGKQCR ERWHNHLNPA INKEAWTQEE 120 ELALIHAHQI YGNKWAELAK LLPGRSDNAI KNHWNSSVKK KLDSYLASGL LAQIPALPLV 180 GHQTQHMLSS SLRMQSSGDD SGLKGIEAEE ILECSQDSTV AVCFKSSSEM ANSVLHTREE 240 FMLTQESGSA KEQSLSPPSC SDQYYTSLED FSIPEFTCDA DCSDKFLHQN FSHDAETSAG 300 SDHQFILHAL PDISSLEVGQ ESSQLQTHCI GTNESHETMN IACRTSEELR ASTSMGDIAM 360 DSYKHGPVLI PDDECCRVLF SEALNDGVFC GSLTKGSNIV PSGGCTDSFC CQSLSSIIPE 420 AGGSSAVQFY CSSGSLMVTP CSQPSGSLCS LQSVDCGAVL YSDEPNRLFE TQEHGFVTSA 480 RDGFIYTNDS ADPPCNNDID DTGMQEQPDI LKEPSKLVPV NSFGSGSDIT DTCHSMSGRP 540 EHQDAGALCY EPPRFPSLDI PFLSCDLIQS GGDTQQEYSP LGIRRLMMSS MNCVTPFRLW 600 DSPSRDNSPD AVLKSAAKTF TGTPSILKKR HRELLSPLSD RRSDKKLEID MTSRLTKDFS 660 RLDVMFDESG AQKAPLLSPS PNCKRSSGAS PEDKENFNHA FKGVKGKGRD GIASSADSNS 720 QENIKRATVD VDVKNMADIE SAAHVVEQPS GVLVEHNMND LLLHSPDQVG SKADRLLGSS 780 ARTPRNQQPR SLTAASKQGI SSTLSSGNPR APVKSPAVCG KKHGSHSVVV TCVLSASSSA 840 PLETTGHNVR NDAGVETFSI YDYGSFTSTS NFFQDIGYFM SPGDRSYDAI GLMKHISEHS 900 ATAYANAQEV LGNETPKTLQ KGTCNNHGNM DQEKTPHNRH SHLAPTVLTE CRTLDFSECG 960 TPGKGTENSK SSNAVVSFSS PSSYLLKGCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-64 | 35 | 162 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-64 | 35 | 162 | 32 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845553.1 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X1 | ||||
Refseq | XP_018845554.1 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X1 | ||||
Refseq | XP_018845555.1 | 0.0 | PREDICTED: myb-related protein 3R-1 isoform X1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A2I4GNU2 | 0.0 | A0A2I4GNU2_JUGRE; myb-related protein 3R-1 isoform X1 | ||||
STRING | cassava4.1_024255m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
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