PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004412-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23875.3 Da PI: 9.2075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.6 | 3.9e-07 | 45 | 91 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++ + Lr+llP + +K s ++ +Av+YIk+L+ WALNUT_00004412-RA 45 DTERQRRQKMAILNASLRSLLPVEM--IMGKRSLSDHMSEAVNYIKYLK 91 67*********************63..********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-9 | 35 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.604 | 38 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-4 | 38 | 95 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-7 | 44 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51450 | 7.473 | 93 | 114 | IPR001611 | Leucine-rich repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLRDTAERQS RSSFNVAKSL PHKISSTSDN DEANTGNNKK IIRRDTERQR RQKMAILNAS 60 LRSLLPVEMI MGKRSLSDHM SEAVNYIKYL KNKLEELSVR SNKLKELSNF SVLGLGNQRS 120 DNNLQNRVMV HPCWDGVEIV ITSNVNEDSL LLSEVLEILL EEALSVVTCS STKANERLIY 180 TIQAKVNDFG CGLDLHELQR KLNALVMSST R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830661.1 | 1e-152 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A2I4FG85 | 1e-151 | A0A2I4FG85_JUGRE; transcription factor bHLH36-like | ||||
STRING | XP_010109064.1 | 3e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 8e-38 | bHLH family protein |