PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004355-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 295aa    MW: 33513.6 Da    PI: 8.3997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004355-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l ++v ++G g+W+++++  g+ R +k+c++rw +yl
  WALNUT_00004355-RA 16 KGLWSPEEDQRLRNYVLKHGHGCWSSVPKNAGLQRNGKSCRLRWINYL 63
                        678*******************************************97 PP

2Myb_DNA-binding46.67.8e-1570114248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g + +eE++ ++  +++lG++ W+ Ia++++ gRt++++k++w++y+
  WALNUT_00004355-RA  70 GMFCKEEEDTILTFHRMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYM 114
                         55668****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0971167IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-231165IPR009057Homeodomain-like
SuperFamilySSF466893.0E-2913110IPR009057Homeodomain-like
SMARTSM007172.5E-121565IPR001005SANT/Myb domain
PfamPF002491.8E-151663IPR001005SANT/Myb domain
CDDcd001673.80E-111963No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2466118IPR009057Homeodomain-like
PROSITE profilePS5129419.39568118IPR017930Myb domain
SMARTSM007176.5E-1268116IPR001005SANT/Myb domain
PfamPF002491.2E-1369113IPR001005SANT/Myb domain
CDDcd001674.98E-1074114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGCKSSEKPI KPKHRKGLWS PEEDQRLRNY VLKHGHGCWS SVPKNAGLQR NGKSCRLRWI  60
NYLRPGLKRG MFCKEEEDTI LTFHRMLGNK WSQIAQHLPG RTDNEIKNYW HSYMKKKVAK  120
AEEMKAHIKT QYTSSSSDIN MDSSPSPKMS AIGVPIYNSV LGHVGKSLKC TDQESVPQTC  180
DFPGDQANCS NFLPKVLFAE WLSLDHVHGW NNIADSGEGL ISRSDAPNSH NPNFQFTPMH  240
GFSSNDGTYG GQFHNVQSHA SSTEMFNSQF KFEDQFISGD DVCRDFNMNN DVMYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-26711818128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830637.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K49e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2I4FG730.0A0A2I4FG73_JUGRE; transcription factor LAF1-like
STRINGEOY231731e-117(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-57myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]