PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004354-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 263aa    MW: 29428.6 Da    PI: 5.5862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004354-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-091443130
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                        +g W++eEd++lv++++ +G g+W++ +++
  WALNUT_00004354-RA 14 KGTWSPEEDQILVQYINNHGHGSWRSLPKH 43
                        799***********************9988 PP
2Myb_DNA-binding43.38.2e-144484648
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +eE++  ++++ +lG++ W++Ia+ ++ gRt++++k++w+++l
  WALNUT_00004354-RA 44 AEEEDTVIQLHGMLGNR-WAAIASQLP-GRTDNEIKNFWNTHL 84
                        79***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-13543IPR009057Homeodomain-like
PROSITE profilePS5129415.853988IPR017930Myb domain
SuperFamilySSF466891.41E-181180IPR009057Homeodomain-like
SMARTSM007171.9E-161386IPR001005SANT/Myb domain
CDDcd001671.29E-111684No hitNo description
PfamPF002499.7E-134484IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-204485IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRAPCCDKE GVKKGTWSPE EDQILVQYIN NHGHGSWRSL PKHAEEEDTV IQLHGMLGNR  60
WAAIASQLPG RTDNEIKNFW NTHLRKRPLC SVQRPWVHKP SSKLDLSNVE SESPSTRHMV  120
QWESARVEAE ARLSKESLLH KPSSMGWTDS DYFLRLWNTE VGESFRKMNG KDGEACQSPV  180
SQASSSVKCG SGSDVTVQAK NSTRTWGATN MTQEHEEDSY RPMIEDAMAS PNSLSSYNLI  240
DSSNTAAFDL LLDFPDGDDV FLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-14128725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830651.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D92e-77MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2I4FG740.0A0A2I4FG74_JUGRE; myb-related protein 308-like
STRINGEOX960132e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-75myb domain protein 17