PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004167-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 295aa    MW: 33572.6 Da    PI: 6.1009
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004167-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33.1e-39141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i++lq+ ++  k
  WALNUT_00004167-RA  14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKVIKNLDQPDKDEAMRTIIFQSDMRANDPVGGCYRMIRDLQRLIDYNK 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+ + ++
  WALNUT_00004167-RA 105 AELEIVLHQ 113
                         ***998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.52813114IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3614109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNINPRHGNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFLNAHKLF GVSNITKVIK  60
NLDQPDKDEA MRTIIFQSDM RANDPVGGCY RMIRDLQRLI DYNKAELEIV LHQLALCRAQ  120
AHQHQQPHVQ MPEVADPIFN SENHVINSAA DPLGSYNNGV QYHYLGLPHQ EQYFVVNNDN  180
LQEDVSAWAV QESASNLSSL HVKNVDVGDE CDDIKPIFER PCERNEIKLG HDQEKVHERR  240
FVPSLHLFIS SSYEAMLRID NSILKEEDGS IQQAAQEDHD LKGAATLFTL TNCNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-24101087105LOB family transfactor Ramosa2.1
5ly0_B3e-24101087105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821635.10.0PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW12e-70LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A2I4EQF70.0A0A2I4EQF7_JUGRE; LOB domain-containing protein 22-like
STRINGXP_006466020.17e-90(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.19e-68LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]