PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004134-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8588.47 Da PI: 9.6618 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.2e-10 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a +++ ++ +W +a+ +g g+++++++ ++ WALNUT_00004134-RA 15 SWTPKQNKQFEQALALYDKDtpdRWQNVAKAVG-GKSAEEVRRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.65E-13 | 9 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.719 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-8 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-5 | 15 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-6 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MASSLFSSSS GSNSSWTPKQ NKQFEQALAL YDKDTPDRWQ NVAKAVGGKS AEEVRRHYEA 60 AHEESKAIMK PKHERH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-21 | 6 | 68 | 1 | 63 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821513.1 | 2e-41 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 1e-22 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2I4EQ46 | 5e-40 | A0A2I4EQ46_JUGRE; protein RADIALIS-like 4 | ||||
STRING | XP_008241690.1 | 1e-28 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-23 | RAD-like 1 |